CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G285700.1	Wheat	cytosol	22.35	13.1
CDX98037	Canola	cytosol	54.12	12.27
KRG94673	Soybean	endoplasmic reticulum	54.12	12.2
CDY21070	Canola	cytosol	52.94	11.97
CDY66539	Canola	cytosol	52.94	11.97
CDY19421	Canola	cytosol	52.94	11.94
CDX71966	Canola	cytosol	52.94	11.9
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	35.29	11.76
KRH06855	Soybean	endoplasmic reticulum	52.94	11.72
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	32.94	10.85
Solyc03g097790.2.1	Tomato	plastid	37.65	10.56
KRH08399	Soybean	endoplasmic reticulum	44.71	10.13
KRH70055	Soybean	endoplasmic reticulum	44.71	10.13
EES20054	Sorghum	plastid	44.71	10.08
Zm00001d039157_P001	Maize	plastid	44.71	10.08
VIT_14s0068g01280.t01	Wine grape	mitochondrion	43.53	9.87
Zm00001d044665_P001	Maize	plastid	43.53	9.81
Os05t0593100-01	Rice	plasma membrane	43.53	9.81
TraesCS1A01G440200.1	Wheat	cytosol	43.53	9.74
TraesCS1B01G475400.3	Wheat	golgi	43.53	9.74
TraesCS1D01G449200.3	Wheat	cytosol	43.53	9.74
CDY16036	Canola	cytosol	52.94	9.49
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	43.53	9.39
KXG22879	Sorghum	plastid	43.53	8.98
TraesCS1D01G281400.1	Wheat	cytosol	37.65	8.49
TraesCS1B01G291300.1	Wheat	cytosol	36.47	8.22
TraesCS1A01G282100.1	Wheat	cytosol	36.47	8.2
CDY26596	Canola	cytosol	52.94	7.33
TraesCS5A01G063700.1	Wheat	cytosol	8.24	2.89
Zm00001d012311_P001	Maize	plastid	5.88	2.49

Protein Annotations

EnsemblPlants:CDY05652	EnsemblPlantsGene:GSBRNA2T00120640001	GO:A0A078EXF0	ProteinID:CDY05652	ProteinID:CDY05652.1	TMHMM:TMhelix
UniParc:UPI0004EF449B	MapMan:24.1.1.2.3	:	:	:	:

Description

BnaC02g38850D

Coordinates

chrLK031963:+:586569..587587

Molecular Weight (calculated)

9712.7 Da

IEP (calculated)

7.120

GRAVY (calculated)

0.104

Length

85 amino acids

Sequence
(BLAST)

1: MISSYLCSQI DCGRIPVDSY LTSDFVVTDE AKYPTISPLK EVVDNIQSQV AKQNQCDRSH RRYIPILSCI SLKNVYASFV FILIY

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.