CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68044
CDX79234
CDX87505
CDX88386
CDY26836
CDY68886

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	CDX68044	AT1G77760.1	21798944
AT1G12840.1	CDX79234	AT1G77760.1	21798944
AT1G12840.1	CDX87505	AT1G77760.1	21798944
AT1G12840.1	CDX88386	AT1G77760.1	21798944
AT1G12840.1	CDY26836	AT1G77760.1	21798944
AT1G12840.1	CDY68886	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019792.1-P	Field mustard	cytosol	100.0	100.0
CDY19421	Canola	cytosol	98.93	98.41
CDY21070	Canola	cytosol	96.8	96.54
CDY66539	Canola	cytosol	96.8	96.54
CDX71966	Canola	cytosol	97.07	96.3
AT1G12840.1	Thale cress	cytosol	96.27	96.27
KRG94673	Soybean	endoplasmic reticulum	82.93	82.49
VIT_14s0068g01280.t01	Wine grape	mitochondrion	81.6	81.6
KRH70055	Soybean	endoplasmic reticulum	81.07	81.07
KRH08399	Soybean	endoplasmic reticulum	81.07	81.07
KRH06855	Soybean	endoplasmic reticulum	81.6	79.69
Solyc03g097790.2.1	Tomato	plastid	63.73	78.88
CDY16036	Canola	cytosol	97.07	76.79
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	52.0	76.47
EES20054	Sorghum	plastid	76.27	75.86
Os05t0593100-01	Rice	plasma membrane	76.27	75.86
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.0	75.58
Zm00001d039157_P001	Maize	plastid	75.47	75.07
Zm00001d044665_P001	Maize	plastid	74.93	74.54
TraesCS1A01G440200.1	Wheat	cytosol	73.07	72.11
TraesCS1B01G475400.3	Wheat	golgi	73.07	72.11
TraesCS1D01G449200.3	Wheat	cytosol	72.8	71.84
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	73.6	70.05
KXG22879	Sorghum	plastid	75.73	68.93
CDY26596	Canola	cytosol	97.07	59.28
TraesCS1B01G291300.1	Wheat	cytosol	59.2	58.89
TraesCS1D01G281400.1	Wheat	cytosol	58.93	58.62
TraesCS1A01G282100.1	Wheat	cytosol	58.93	58.47
CDY05652	Canola	cytosol	12.27	54.12
TraesCS7A01G285700.1	Wheat	cytosol	18.4	47.59
TraesCS5A01G063700.1	Wheat	cytosol	30.67	47.52
Zm00001d012311_P001	Maize	plastid	14.67	27.36

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	GO:A0A078EAR1	InterPro:ATPase_V1-cplx_csu
EnsemblPlants:CDX98037	ProteinID:CDX98037	ProteinID:CDX98037.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSBRNA2T00105405001	PFAM:PF03223	PANTHER:PTHR10137
PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI000253EC6F	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:

Description

BnaA06g07880D

Coordinates

chrLK031902:-:642292..645042

Molecular Weight (calculated)

42635.5 Da

IEP (calculated)

5.536

GRAVY (calculated)

-0.316

Length

375 amino acids

Sequence
(BLAST)

001: MTSRYWVVSL PVKDSSSTLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSNLV KPEDVVTSEH LVTLLAVVPK YSQKDWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNYRTSA REKGFQIRDF EHSVEAQETR KQELQKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSGYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.