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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G77760.1 CDY36901 AT3G48150.1 21798944
AT1G77760.1 CDY44976 AT3G48150.1 21798944
AT1G77760.1 CDY58069 AT3G48150.1 21798944
AT1G77760.1 CDY58070 AT3G48150.1 21798944
AT1G77760.1 CDY70805 AT3G48150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87505 Canola cytosol, mitochondrion, peroxisome, plastid 30.98 99.28
CDY68886 Canola cytosol, mitochondrion 72.71 89.41
CDX87504 Canola cytosol 51.34 88.78
CDX68044 Canola plastid 89.49 87.91
CDX79234 Canola plastid 88.81 87.16
AT1G77760.1 Thale cress cytosol 87.58 85.39
CDY26836 Canola cytosol 50.22 80.61
VIT_18s0001g03910.t01 Wine grape plastid 75.5 74.26
KRH18816 Soybean cytosol, mitochondrion, peroxisome 73.04 73.7
PGSC0003DMT400077648 Potato cytosol 74.72 73.33
Solyc11g013810.1.1 Tomato cytosol, nucleus 74.5 73.03
KRH53180 Soybean cytosol, mitochondrion, peroxisome 71.59 71.91
KRH16605 Soybean cytosol 68.79 69.41
GSMUA_Achr9P15480_001 Banana cytosol 56.49 67.24
KRH16606 Soybean cytosol 65.44 67.01
GSMUA_Achr8P23160_001 Banana mitochondrion 51.01 66.67
EES13985 Sorghum cytosol, mitochondrion, peroxisome, plastid 68.01 66.02
Zm00001d049995_P001 Maize cytosol, mitochondrion, peroxisome, plastid 49.33 65.33
Os08t0468100-01 Rice plastid 66.78 65.17
TraesCS7A01G078500.1 Wheat cytosol 63.09 65.13
Zm00001d031769_P001 Maize mitochondrion 50.0 64.97
Os02t0770800-01 Rice cytosol 64.54 64.9
TraesCS7D01G073700.1 Wheat cytosol, nucleus, peroxisome 63.2 64.87
TraesCS6D01G306000.1 Wheat cytosol, peroxisome, plastid 64.65 64.58
Os08t0468700-00 Rice plastid 65.88 64.3
TraesCS6A01G017500.2 Wheat cytosol, plastid 65.66 64.22
Zm00001d052139_P001 Maize cytosol, mitochondrion, peroxisome 46.53 64.2
TraesCS6D01G020700.1 Wheat cytosol, plastid 65.55 64.11
EES07601 Sorghum cytosol, mitochondrion, peroxisome 63.76 63.9
TraesCS6B01G024900.1 Wheat cytosol, plastid 65.21 63.79
TraesCS6B01G356800.1 Wheat cytosol, peroxisome, plastid 63.76 63.55
TraesCS6A01G326200.1 Wheat plastid 63.87 63.52
Zm00001d018206_P001 Maize peroxisome 46.53 63.03
TraesCS4A01G376700.1 Wheat cytosol 63.09 62.95
HORVU6Hr1G003300.1 Barley mitochondrion 65.77 61.83
KRH18814 Soybean cytosol, mitochondrion, plastid 31.66 61.79
Zm00001d017025_P001 Maize cytosol 60.51 60.79
OQU85223 Sorghum cytosol 60.63 58.72
GSMUA_Achr3P07200_001 Banana cytosol 63.87 50.76
GSMUA_Achr5P05820_001 Banana mitochondrion, nucleus, peroxisome 21.48 42.01
GSMUA_Achr5P05830_001 Banana cytosol 15.44 38.55
CDY63711 Canola cytosol 9.28 37.56
CDY59316 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 11.63 37.01
CDY02688 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 11.63 37.01
CDX78759 Canola endoplasmic reticulum 11.41 36.3
CDY38457 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 11.3 35.94
CDX70774 Canola endoplasmic reticulum 10.74 35.29
CDY28560 Canola endoplasmic reticulum 5.15 24.08
CDY16891 Canola golgi, plasma membrane, vacuole 14.65 16.48
Protein Annotations
Gene3D:2.40.30.10Gene3D:2.60.40.650MapMan:25.1.4.1Gene3D:3.10.120.10Gene3D:3.40.50.80Gene3D:3.90.420.10
GO:A0A078DGI8EnsemblPlants:CDX88386ProteinID:CDX88386ProteinID:CDX88386.1InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BSInterPro:Fd_Rdtase_FAD-bdInterPro:Flavoprot_Pyr_Nucl_cyt_RdtaseGO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0006809GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009703GO:GO:0009987
GO:GO:0016491GO:GO:0020037GO:GO:0030151GO:GO:0042128GO:GO:0043546GO:GO:0046872
GO:GO:0050464GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00147913001InterPro:IPR001199InterPro:IPR017927InterPro:IPR036374
InterPro:IPR036400InterPro:Ig_E-setInterPro:MoCF_OxRdtse_dimerInterPro:Mopterin_OxRdtase_eukInterPro:NADH-Cyt_B5_reductaseInterPro:Nitr_rd_NADH
InterPro:OxRdtase_FAD-bd_domInterPro:OxRdtase_FAD/NAD-bdInterPro:OxRdtase_Mopterin-bd_domInterPro:OxRdtase_Mopterin-bd_sfInterPro:OxRdtase_Mopterin_BSPFAM:PF00173
PFAM:PF00174PFAM:PF00175PFAM:PF00970PFAM:PF03404PIRSF:PIRSF000233PRINTS:PR00363
PRINTS:PR00371PRINTS:PR00406PRINTS:PR00407ScanProsite:PS00191ScanProsite:PS00559PFscan:PS50255
PFscan:PS51384PANTHER:PTHR19370PANTHER:PTHR19370:SF182InterPro:Riboflavin_synthase-like_b-brlSMART:SM01117SUPFAM:SSF52343
SUPFAM:SSF55856SUPFAM:SSF56524SUPFAM:SSF63380SUPFAM:SSF81296UniParc:UPI0004EE7C1ESEG:seg
Description
BnaC06g38300D
Coordinates
chrLK031855:-:690061..693366
Molecular Weight (calculated)
100129.0 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.414
Length
894 amino acids
Sequence
(BLAST)
001: MATSVDNRHY PRLSSALNGG VVHSFKPPLV PSPSLGRDQD QSVNVPTEKS VDTTENQTTK EDSYDSSDDE DESHNRYVSY YKEMVLKSNS DLEPSALDSR
101: DESTADNWIH RNSSMVRLTG KHPFNAEAPL PRLMHHGFIT PVPLHYVRNH GGVPKAEWSD WSVEVTGLVK RPARLTMEQL ITEFPSREFP VTLVCAGNRR
201: KEQNMVKQTI GFNWGSAGVS TSLWRGVALS DVLRRCGVYS KRGGALNVCF EGAEDLPGGG GSKYGTSIKK EMAMDPARDI ILAYMQNGEL LTPDHGFPVR
301: VIIPGFIGGR MVKWLKRIIV TPRESDNYYH YKDNRVLPSY VDAELANEES WWYRPEYIIN ELNINSVITT PGHEEILPIN AFTTQKPYTL KGYAYSGGGK
401: KVTRVEVTLD GGETWSVCEL DHQEKPNNAR EVAVRAWDES LNTQPEKLIW NLMGMMNNCW FRIKTNVCKP HRGEIGIVFE HPTRPGNQSG GWMAKERQIE
501: KSSESHPTLK KSVSTPFMNT ASKMYSMSEV RKHNSAESAW IIVHGHIYDC TRFLKDHPGG SDSILINAGT DCTEEFEAIH SDKAKKLLED YRIGELITTG
601: YDSSPNVSVH GGSSVMSLLA PIRELAPAKN IALVNPREKV PVKLIEKTSI SHDVRRFRFA LPSEDQQLGL PVGKHIFLCA TINDKLCLRA YTPTSTVDAV
701: GYIDLVIKVY FKNVHPRFPN GGLMSQHLDS LPIGAVLDIK GPLGHIEYQG RGKFMVSGKP KFANKLAMLA GGTGITPIYQ VIQSILSDPE DETEMFVVYA
801: NRTEDDILVR EELEGWADKF PDRLKIWYVV EIAKEGWEYS TGFITEAVLR EHVPEGLEGE SLALACGPPP MIQFALQPNL EKMGYNIKED LLIF
Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)
001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF
Arabidopsis Description
NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.