CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	CDY36901	AT3G48150.1	21798944
AT1G77760.1	CDY44976	AT3G48150.1	21798944
AT1G77760.1	CDY58069	AT3G48150.1	21798944
AT1G77760.1	CDY58070	AT3G48150.1	21798944
AT1G77760.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	34.94	91.04
CDY26836	Canola	cytosol	69.19	90.31
Bra008333.1-P	Field mustard	plastid	99.17	79.58
CDX68044	Canola	plastid	96.15	76.81
CDX79234	Canola	plastid	95.74	76.4
AT1G77760.1	Thale cress	cytosol	94.22	74.7
CDX88386	Canola	cytosol, plastid	89.41	72.71
GSMUA_Achr8P23160_001	Banana	mitochondrion	64.1	68.13
KRH18814	Soybean	cytosol, mitochondrion, plastid	40.85	64.85
VIT_18s0001g03910.t01	Wine grape	plastid	80.33	64.25
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	78.27	64.22
PGSC0003DMT400077648	Potato	cytosol	79.5	63.45
Solyc11g013810.1.1	Tomato	cytosol, nucleus	79.37	63.27
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	76.89	62.81
KRH16605	Soybean	cytosol	74.42	61.06
GSMUA_Achr9P15480_001	Banana	cytosol	61.9	59.92
KRH16606	Soybean	cytosol	71.25	59.34
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	72.76	57.44
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	68.5	57.18
Os08t0468100-01	Rice	plastid	71.94	57.1
TraesCS7A01G078500.1	Wheat	cytosol	67.81	56.93
Os02t0770800-01	Rice	cytosol	69.46	56.81
Os08t0468700-00	Rice	plastid	70.98	56.33
TraesCS6B01G024900.1	Wheat	cytosol, plastid	70.56	56.13
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	69.05	56.09
TraesCS6A01G017500.2	Wheat	cytosol, plastid	70.43	56.02
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	68.5	55.83
TraesCS6D01G020700.1	Wheat	cytosol, plastid	70.01	55.69
TraesCS6A01G326200.1	Wheat	plastid	68.36	55.28
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	68.09	55.18
TraesCS4A01G376700.1	Wheat	cytosol	67.95	55.13
Zm00001d031769_P001	Maize	mitochondrion	51.17	54.07
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	48.14	54.01
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	50.07	53.93
HORVU6Hr1G003300.1	Barley	mitochondrion	70.29	53.73
Zm00001d018206_P001	Maize	peroxisome	48.14	53.03
Zm00001d017025_P001	Maize	cytosol	64.51	52.7
CDX87504	Canola	cytosol	37.28	52.42
OQU85223	Sorghum	cytosol	64.79	51.03
GSMUA_Achr3P07200_001	Banana	cytosol	72.08	46.58
CDY63711	Canola	cytosol	10.73	35.29
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.62	35.23
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.62	35.23
CDX78759	Canola	endoplasmic reticulum	13.21	34.16
GSMUA_Achr5P05830_001	Banana	cytosol	16.78	34.08
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.07	33.81
CDX70774	Canola	endoplasmic reticulum	12.52	33.46
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	18.16	28.88
CDY28560	Canola	endoplasmic reticulum	5.36	20.42
CDY16891	Canola	golgi, plasma membrane, vacuole	13.07	11.95

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
GO:A0A078JTD0	UniProt:A0A078JTD0	EnsemblPlants:CDY68886	ProteinID:CDY68886	ProteinID:CDY68886.1	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037
GO:GO:0030151	GO:GO:0042128	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00080962001	InterPro:IPR001199
InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk
InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	PFAM:PF00173
PFAM:PF00174	PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	PFscan:PS50255	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856	SUPFAM:SSF56524
SUPFAM:SSF63380	SUPFAM:SSF81296	UniParc:UPI0004EE1239	:	:	:

Description

BnaCnng60930DBnaCnng60930D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTD0]

Coordinates

chrLK038199:-:1776..4869

Molecular Weight (calculated)

81393.8 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.280

Length

727 amino acids

Sequence
(BLAST)

001: FPVTLVCAGN RRKEQNMVKQ TIGFNWGSAG VSTSLWKGVP LSEILRRCGV YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG
101: ELLTPDHGFP VRIIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANA EAWWYKPEYI INELNINSVI TTPGHEEILP INAFTTQKPY
201: TLRGYAYSGG GKKVTRVEVT LDGGETWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV
301: CKPHRGEIGI VFEHPTRPGN QSGGWMAKER QLEISSESNP TLKKSVSSPF MNTSSKMYSI SDVRKHNSVE SAWIIVHGHV YDCTRFLKDH PGGIDSILIN
401: AGTDCTEEFE AIHSDKAKKI LEDYRIGELI TTGYDSSPNV SVHGGSNVAP LLAPIKELAP PKNIALVNPR EKVPVKLIEK TSISHDVRRF RFALPSEDQQ
501: LGLPVGKHIF LCANINDKLC LRAYTPTSTV DAVGHIDLVV KVYFKQVHPR FPDGGLMSQH LDSLSIGAVL DIKGPLGHIE YKGKGNFMVN GKPKFAKKLA
601: MLAGGTGITP IYQVIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA NKHKERLKVW YVVEIAKEGW NYSTGFITED VLREHVPEGL EGESLALACG
701: PPPMIQFALQ PNLEKMGYNV KEDLLIF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.