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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g113740.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G77760.1 Solyc03g113740.2.1 AT3G48150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400077648 Potato cytosol 97.81 97.91
VIT_18s0001g03910.t01 Wine grape plastid 80.48 80.75
CDY68886 Canola cytosol, mitochondrion 63.27 79.37
KRH18816 Soybean cytosol, mitochondrion, peroxisome 75.0 77.2
KRH53180 Soybean cytosol, mitochondrion, peroxisome 75.33 77.19
AT1G37130.1 Thale cress cytosol 76.43 76.01
Bra003670.1-P Field mustard plastid 75.11 75.27
CDX68044 Canola plastid 75.0 75.16
CDX79234 Canola plastid 74.89 74.97
Bra008333.1-P Field mustard plastid 74.34 74.83
Bra015656.1-P Field mustard cytosol 72.92 74.72
CDX88386 Canola cytosol, plastid 73.03 74.5
AT1G77760.1 Thale cress cytosol 73.68 73.28
CDX87505 Canola cytosol, mitochondrion, peroxisome, plastid 22.37 73.12
KRH16605 Soybean cytosol 70.72 72.8
GSMUA_Achr9P15480_001 Banana cytosol 59.21 71.9
CDY26836 Canola cytosol 43.53 71.27
KRH16606 Soybean cytosol 67.65 70.68
GSMUA_Achr8P23160_001 Banana mitochondrion 52.19 69.59
EES13985 Sorghum cytosol, mitochondrion, peroxisome, plastid 70.18 69.49
Os08t0468100-01 Rice plastid 69.52 69.21
Zm00001d049995_P001 Maize cytosol, mitochondrion, peroxisome, plastid 50.99 68.89
TraesCS7A01G078500.1 Wheat cytosol 65.24 68.71
Zm00001d031769_P001 Maize mitochondrion 51.64 68.46
KRH18814 Soybean cytosol, mitochondrion, plastid 34.32 68.34
Os08t0468700-00 Rice plastid 68.64 68.34
TraesCS7D01G073700.1 Wheat cytosol, nucleus, peroxisome 65.13 68.2
TraesCS6B01G024900.1 Wheat cytosol, plastid 68.09 67.94
TraesCS6A01G017500.2 Wheat cytosol, plastid 68.09 67.94
TraesCS6D01G020700.1 Wheat cytosol, plastid 68.09 67.94
Zm00001d052139_P001 Maize cytosol, mitochondrion, peroxisome 47.81 67.28
EES07601 Sorghum cytosol, mitochondrion, peroxisome 65.13 66.59
TraesCS4A01G376700.1 Wheat cytosol 65.35 66.52
Zm00001d018206_P001 Maize peroxisome 47.92 66.21
HORVU6Hr1G003300.1 Barley mitochondrion 68.75 65.93
Os02t0770800-01 Rice cytosol 64.25 65.92
TraesCS6D01G306000.1 Wheat cytosol, peroxisome, plastid 64.47 65.7
TraesCS6B01G356800.1 Wheat cytosol, peroxisome, plastid 64.14 65.22
TraesCS6A01G326200.1 Wheat plastid 64.04 64.96
Zm00001d017025_P001 Maize cytosol 61.4 62.92
OQU85223 Sorghum cytosol 61.84 61.11
GSMUA_Achr3P07200_001 Banana cytosol 67.87 55.02
GSMUA_Achr5P05820_001 Banana mitochondrion, nucleus, peroxisome 23.46 46.83
GSMUA_Achr5P05830_001 Banana cytosol 16.34 41.62
Solyc10g081440.1.1 Tomato extracellular, plastid 10.86 35.61
Solyc05g018520.2.1 Tomato plastid 11.73 33.13
Protein Annotations
Gene3D:2.40.30.10Gene3D:2.60.40.650MapMan:25.1.4.1Gene3D:3.10.120.10Gene3D:3.40.50.80Gene3D:3.90.420.10
InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sfInterPro:Cyt_B5_heme-BSInterPro:Fd_Rdtase_FAD-bdInterPro:Flavoprot_Pyr_Nucl_cyt_RdtaseGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0006809GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009703
GO:GO:0009987GO:GO:0016491GO:GO:0020037GO:GO:0030151GO:GO:0042128GO:GO:0043546
GO:GO:0046872GO:GO:0050464GO:GO:0055114InterPro:IPR001199InterPro:IPR017927InterPro:IPR036374
InterPro:IPR036400InterPro:Ig_E-setUniProt:K4D6I5InterPro:MoCF_OxRdtse_dimerInterPro:Mopterin_OxRdtase_eukInterPro:NADH-Cyt_B5_reductase
InterPro:Nitr_rd_NADHInterPro:OxRdtase_FAD-bd_domInterPro:OxRdtase_FAD/NAD-bdInterPro:OxRdtase_Mopterin-bd_domInterPro:OxRdtase_Mopterin-bd_sfInterPro:OxRdtase_Mopterin_BS
PFAM:PF00173PFAM:PF00174PFAM:PF00175PFAM:PF00970PFAM:PF03404PIRSF:PIRSF000233
PRINTS:PR00363PRINTS:PR00371PRINTS:PR00406PRINTS:PR00407ScanProsite:PS00191ScanProsite:PS00559
PFscan:PS50255PFscan:PS51384PANTHER:PTHR19370PANTHER:PTHR19370:SF182InterPro:Riboflavin_synthase-like_b-brlSMART:SM01117
SUPFAM:SSF52343SUPFAM:SSF55856SUPFAM:SSF56524SUPFAM:SSF63380SUPFAM:SSF81296EnsemblPlantsGene:Solyc11g013810.1
EnsemblPlants:Solyc11g013810.1.1UniParc:UPI000276A5D9SEG:seg:::
Description
Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:K4D6I5]
Coordinates
chr11:-:7173973..7178090
Molecular Weight (calculated)
102570.0 Da
IEP (calculated)
7.056
GRAVY (calculated)
-0.377
Length
912 amino acids
Sequence
(BLAST)
001: MAASVENRQY THLEPGLSGV GRTFKPRPDS PVRGCNFPPS SNHELPFQKK QNPPIYLDYS SSEDEDDDDE KNEYVQMIKK GKTELEPSIH DTRDEGTADN
101: WIERNFSLIR LTGKHPFNSE PPLSRLMHHG FITPVPLHYV RNHGPVPKAS WSDWTVEVTG LVKRPMKFTM DQLVNEFPSR ELPVTLVCAG NRRKEQNMVK
201: QTIGFNWGAA AVSTTVWRGV PLRALLKRCG VQSKKKGALN VCFEGSDVLP GGGGSKYGTS IKKEFAMDPS RDIIVAYMQN GEMLSPDHGF PVRMIIPGFI
301: GGRMVKWLKR IVVTTQESES YYHYKDNRVL PPHVDAELAN AEAWWYKPEY IINELNINSV ITTPCHEEIL PINAWTTQRP YTLRGYAYSV CGGKKVTRVE
401: VTLDGGETWS VCTLDHPEKP TKYGKYWCWC FWSLEVEVLD LLSAKEIAVR ATDETLNTQP EKLIWNVMGM MNNCWFRVKM NVCKPHKGEI GIVFEHPTQP
501: GNQSGGWMAK ERHLEISAVA PPTLKKSIST PFMNTASKMY SMSEVRKHNS SDSAWIIVHG HIYDASRFLK DHPGGVDSIL INAGTDCTEE FDAIHSDKAK
601: KLLEDFRIGE LITTGYTSDS SPNSSVHGSS SISSFLAPIK ELVQTPTRSV ALIPREKIPC KLVDKQSISH DVRKFKFALP SEDQVLGLPV GKHIFLCATV
701: DDKLCMRAYT PTSTVDEVGF FELVVKIYFK GVHPKFPNGG QMSQHLDSLP IGAFLDVKGP LGHIEYQGKG NFLVHGKQKF AKKLAMIAGG TGITPVYQVM
801: QSILKDPEDD TEMYVVYANR TEDDILLKDE LDAWAEQVPN RVKVWYVVQE SITQGWKYST GFVTESILRE HIPEPSHTTL ALACGPPPMI QFAINPNLEK
901: MGYDIKEELL VF
Best Arabidopsis Sequence Match ( AT1G37130.1 )
(BLAST)
001: MAASVDNRQY ARLEPGLNGV VRSYKPPVPG RSDSPKAHQN QTTNQTVFLK PAKVHDDDED VSSEDENETH NSNAVYYKEM IRKSNAELEP SVLDPRDEYT
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF
Arabidopsis Description
NIA2Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.