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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • peroxisome 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:peroxisome
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
EES07517

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G77760.1 EES07517 AT3G48150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d018206_P001 Maize peroxisome 71.3 96.36
Zm00001d052139_P001 Maize cytosol, mitochondrion, peroxisome 69.06 95.06
Os02t0770800-01 Rice cytosol 88.9 89.2
TraesCS6D01G306000.1 Wheat cytosol, peroxisome, plastid 86.44 86.15
TraesCS6B01G356800.1 Wheat cytosol, peroxisome, plastid 86.21 85.73
TraesCS6A01G326200.1 Wheat plastid 85.87 85.21
GSMUA_Achr8P23160_001 Banana mitochondrion 54.71 71.34
EES13985 Sorghum cytosol, mitochondrion, peroxisome, plastid 72.87 70.58
GSMUA_Achr9P15480_001 Banana cytosol 58.97 70.04
CDY68886 Canola cytosol, mitochondrion 55.83 68.5
KRH53180 Soybean cytosol, mitochondrion, peroxisome 66.59 66.74
VIT_18s0001g03910.t01 Wine grape plastid 67.83 66.56
KRH18816 Soybean cytosol, mitochondrion, peroxisome 66.03 66.48
OQU85223 Sorghum cytosol 68.16 65.87
PGSC0003DMT400077648 Potato cytosol 66.7 65.31
Solyc11g013810.1.1 Tomato cytosol, nucleus 66.59 65.13
Bra015656.1-P Field mustard cytosol 64.01 64.16
Bra003670.1-P Field mustard plastid 65.36 64.07
KRH16606 Soybean cytosol 62.67 64.03
Bra008333.1-P Field mustard plastid 65.02 64.02
CDX79234 Canola plastid 65.25 63.89
CDX68044 Canola plastid 65.13 63.85
CDX88386 Canola cytosol, plastid 63.9 63.76
AT1G77760.1 Thale cress cytosol 64.91 63.14
KRH16605 Soybean cytosol 62.22 62.64
AT1G37130.1 Thale cress cytosol 64.35 62.6
CDX87505 Canola cytosol, mitochondrion, peroxisome, plastid 19.06 60.93
CDX87504 Canola cytosol 34.98 60.35
KRH18814 Soybean cytosol, mitochondrion, plastid 30.94 60.26
CDY26836 Canola cytosol 37.33 59.78
GSMUA_Achr3P07200_001 Banana cytosol 68.05 53.96
GSMUA_Achr5P05820_001 Banana mitochondrion, nucleus, peroxisome 22.31 43.54
GSMUA_Achr5P05830_001 Banana cytosol 15.36 38.27
EES18413 Sorghum plastid 11.77 37.63
EES03792 Sorghum endoplasmic reticulum 11.44 36.56
EES00217 Sorghum mitochondrion 12.67 36.33
Protein Annotations
Gene3D:2.40.30.10Gene3D:2.60.40.650MapMan:25.1.4.1Gene3D:3.10.120.10Gene3D:3.40.50.80Gene3D:3.90.420.10
EntrezGene:8078943UniProt:C5XTG6InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sfInterPro:Cyt_B5_heme-BSEnsemblPlants:EES07601
ProteinID:EES07601ProteinID:EES07601.1InterPro:Fd_Rdtase_FAD-bdInterPro:Flavoprot_Pyr_Nucl_cyt_RdtaseGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0006809GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009703GO:GO:0009987
GO:GO:0016491GO:GO:0020037GO:GO:0030151GO:GO:0042128GO:GO:0043546GO:GO:0046872
GO:GO:0050464GO:GO:0055114InterPro:IPR001199InterPro:IPR017927InterPro:IPR036374InterPro:IPR036400
InterPro:Ig_E-setInterPro:MoCF_OxRdtse_dimerInterPro:Mopterin_OxRdtase_eukInterPro:NADH-Cyt_B5_reductaseInterPro:Nitr_rd_NADHInterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bdInterPro:OxRdtase_Mopterin-bd_domInterPro:OxRdtase_Mopterin-bd_sfInterPro:OxRdtase_Mopterin_BSPFAM:PF00173PFAM:PF00174
PFAM:PF00175PFAM:PF00970PFAM:PF03404PIRSF:PIRSF000233PRINTS:PR00363PRINTS:PR00371
PRINTS:PR00406PRINTS:PR00407ScanProsite:PS00191ScanProsite:PS00559PFscan:PS50255PFscan:PS51384
PANTHER:PTHR19370PANTHER:PTHR19370:SF100InterPro:Riboflavin_synthase-like_b-brlSMART:SM01117EnsemblPlantsGene:SORBI_3004G312500SUPFAM:SSF52343
SUPFAM:SSF55856SUPFAM:SSF56524SUPFAM:SSF63380SUPFAM:SSF81296unigene:Sbi.4259UniParc:UPI0001A861A5
RefSeq:XP_002454625.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr4:-:64939512..64943098
Molecular Weight (calculated)
98911.9 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.360
Length
892 amino acids
Sequence
(BLAST)
001: MAASVDRHLA PHPWPGNAPP KSFDMFRSGG PGGGGKRRAG SDSDSEDEDT IPPDWRSLYL PRLEVEPPVH DPRDEATSDA WVRRHPALVR LTGKHPFNSE
101: PPVPRLMAHG FITPAPLHYV RNHGPVPRAD WSTWTVEVTG LVRRPARLTM EQLVTEFEAV ELPVTLVCAG NRRKEQNMVR QTVGFNWGPG AISTSVWRGA
201: RLRDVLRRCG VMGAADGAAN VCFEGAEDLP GGGGSKYGTS LRRGVAMDPA RDVILAYMQN GEPLAPDHGF PVRVIVPGFI GGRMVKWLKR IVVASSESES
301: YYHYRDNRVL PSHVDAELAN AEAWWYKPEY MINELNINSV ITTPGHDEVL PINALTTQRP YTIKGYAYSG GGRKVTRVEV TLDGGETWQV CSLDHPERPT
401: KYGKYWCWCF WSVDVEVLDV LGAKEIAVRA WDEAMNTQPE KLIWNLMGMM NNCWFRVKIN ACRPHKGEIG MVFEHPAQPG NQPGGWMARQ KHLETSESAQ
501: GTLKKSTSTP FMNTATTQYT MSEVRRHTSP DSAWIIVHGH IYDCTGFLKD HPGGADSILI NAGTDCTEEF DAIHSDKARG LLDLYRVGEL VVTGSDYSPQ
601: NSHADLRAID EAPAAAAPAA QSVSTVALSN PREKVRCRLV DKKSLSYNVR LFRFALPSPD QKLGLPVGRH VYVCASIDGK LCMRAYTPTS PVDEVGHIEL
701: LIKIYFKDED PKYPNGGLMS QYLDSLPLGA TIDIKGPIGH IEYAGRGGFV VNGERRFARR LAMIAGGTGI TPVYQVIQAV LRDQPDDDTE MHLVYANRTE
801: DDMLLREEID RWAAAHPARL KVWYVVSKVA RPEDGWAYGV GRVDEQVLRE HLPLGDSETL ALVCGPPAMI ECTVRPGLEK MGYDLDKACL VF
Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)
001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF
Arabidopsis Description
NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.