Factsheet for TraesCS6A01G326200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	97.55	97.99
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	96.77	96.99
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	62.85	87.19
Zm00001d018206_P001	Maize	peroxisome	63.74	86.82
Os02t0770800-01	Rice	cytosol	85.32	86.28
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	85.21	85.87
GSMUA_Achr9P15480_001	Banana	cytosol	59.29	70.97
GSMUA_Achr8P23160_001	Banana	mitochondrion	53.95	70.91
TraesCS7A01G078500.1	Wheat	cytosol	66.3	68.82
CDY68886	Canola	cytosol, mitochondrion	55.28	68.36
TraesCS6A01G017500.2	Wheat	cytosol, plastid	68.41	67.29
TraesCS4A01G376700.1	Wheat	cytosol	66.52	66.74
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	65.52	66.48
VIT_18s0001g03910.t01	Wine grape	plastid	67.07	66.34
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	65.52	66.18
Bra008333.1-P	Field mustard	plastid	64.85	64.35
Bra015656.1-P	Field mustard	cytosol	63.63	64.27
Solyc11g013810.1.1	Tomato	cytosol, nucleus	64.96	64.04
PGSC0003DMT400077648	Potato	cytosol	64.85	64.0
CDX88386	Canola	cytosol, plastid	63.52	63.87
Bra003670.1-P	Field mustard	plastid	64.63	63.85
CDX79234	Canola	plastid	64.63	63.78
KRH16605	Soybean	cytosol	62.85	63.77
CDX68044	Canola	plastid	64.4	63.63
AT1G77760.1	Thale cress	cytosol	64.52	63.25
KRH16606	Soybean	cytosol	61.29	63.12
AT1G37130.1	Thale cress	cytosol	63.29	62.05
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	18.91	60.93
CDX87504	Canola	cytosol	34.59	60.15
CDY26836	Canola	cytosol	36.93	59.6
KRH18814	Soybean	cytosol, mitochondrion, plastid	29.92	58.73
GSMUA_Achr3P07200_001	Banana	cytosol	67.3	53.78
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	21.91	43.11
GSMUA_Achr5P05830_001	Banana	cytosol	15.46	38.83
TraesCS3A01G338700.1	Wheat	golgi	11.23	36.2
TraesCS3A01G128600.1	Wheat	mitochondrion	12.46	36.13
TraesCS1A01G305700.1	Wheat	golgi	10.9	35.13

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006809	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0030151	GO:GO:0042128	GO:GO:0043546
GO:GO:0050464	GO:GO:0055114	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400
InterPro:Ig_E-set	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174
PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF100	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856
SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS6A01G326200	EnsemblPlants:TraesCS6A01G326200.1	TIGR:cd02112
TIGR:cd06183	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:559523506..559526501

Molecular Weight (calculated)

99133.3 Da

IEP (calculated)

6.763

GRAVY (calculated)

-0.302

Length

899 amino acids

Sequence
(BLAST)

001: MAASVEYNRQ VSAHPWPTNA QPKAAFDLFS SSSAGNGGRR RSGADSDSDD EDGIPPDWRS LYSPRLDVEP SVKDPRDEAT SDAWVKRHPA LVRLTGKHPF
101: NSEPPLPRLM SHGFITPVPL HYVRNHGAVP RADWSTWTVE VTGLVKRPVK LTMEELVTGF QAVEFPVTLV CAGNRRKEQN MVRQSSGFNW GPGAISTTVW
201: RGVRLRDVLR RCGVMGAGVA SNVCFEGAED LPGGGGCKYG TSLRRSVAMD PARDVILAYM QNGEPLAPDH GFPVRVIVPG FIGGRMVKWL KRIVVACNES
301: ESYYHYRDNR VLPSHVDAEL ANAEAWWYKP ECMINELNIN SVITTPGHDE VLPINALTTQ KPYTMKGYAY SGGGRKVTRV EVTLDGGETW QVCELEHPER
401: PTKYGKYWCW CFWSVDVEVL DLLGAKEMAV RAWDEALNTQ PERLIWNLMG MMNNCWFRVK INVCRPHKGE IGLVFDHPTQ PGNQSGGWMA RQKHIETSET
501: TQGTLKRSTS TPFMSAASAQ FTMSEVRRHA SKESAWIVVH GHVYDCTGFL KDHPGGADSI LINAGSDCTE EFDAIHSAKA RGLLEMYRVG ELIATGTDYS
601: SPQSSSGDLA AIVEAPPAGV EPLVLPPLST TVALANPREK VRCRLVDKKS VSDNVRLFRF ALPSPDHKLG LPVGKHVYVC ASTGGKLCMR AYTPTSSVDE
701: VGHVELLIKI YFKDEDPKFP AGGLMSQYLD ALPLGAPVDI KGPVGHIEYA GRGAFTVGGE PRFARRLAMV AGGTGITPVY QVIQAVLRDQ PDDTTEMHLV
801: YANRTEDDML LREEIDRWAA AHPARLKVWY VVSKVARPGD AWEYGVGRVD EQVLREHLPL GGDGETLALV CGPPAMLECT VRPGLEKMGY DLDKDCLVF

Best Arabidopsis Sequence Match ( AT1G37130.1 )
(BLAST)

001: MAASVDNRQY ARLEPGLNGV VRSYKPPVPG RSDSPKAHQN QTTNQTVFLK PAKVHDDDED VSSEDENETH NSNAVYYKEM IRKSNAELEP SVLDPRDEYT
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF

Arabidopsis Description

NIA2Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.