Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G332300.1 | Wheat | unclear | 99.64 | 99.64 |
| HORVU3Hr1G080010.1 | Barley | cytosol, peroxisome | 28.67 | 98.77 |
| TraesCS3B01G370400.1 | Wheat | endoplasmic reticulum | 98.57 | 98.57 |
| Os01t0814900-01 | Rice | plasma membrane | 89.96 | 89.96 |
| EES03792 | Sorghum | endoplasmic reticulum | 89.25 | 89.25 |
| KRG94933 | Soybean | mitochondrion | 74.19 | 85.89 |
| TraesCS1A01G305700.1 | Wheat | golgi | 85.3 | 85.3 |
| KRH64963 | Soybean | endoplasmic reticulum | 82.08 | 82.37 |
| GSMUA_Achr8P21540_001 | Banana | endoplasmic reticulum | 81.0 | 81.59 |
| Zm00001d043098_P002 | Maize | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 88.17 | 80.39 |
| VIT_08s0056g01150.t01 | Wine grape | endoplasmic reticulum | 77.78 | 78.34 |
| PGSC0003DMT400072515 | Potato | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 77.06 | 77.34 |
| CDY38457 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 77.42 | 76.87 |
| Solyc10g081440.1.1 | Tomato | extracellular, plastid | 76.34 | 76.62 |
| CDX78759 | Canola | endoplasmic reticulum | 77.06 | 76.51 |
| Bra002104.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 76.7 | 76.16 |
| Bra006419.1-P | Field mustard | endoplasmic reticulum | 76.7 | 75.89 |
| AT5G17770.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 76.34 | 75.8 |
| CDY59316 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 75.99 | 75.44 |
| CDY02688 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 75.63 | 75.09 |
| CDX70774 | Canola | endoplasmic reticulum | 72.76 | 74.63 |
| Bra023636.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 66.67 | 74.1 |
| CDY63711 | Canola | cytosol | 58.06 | 73.3 |
| Zm00001d017490_P001 | Maize | mitochondrion | 22.58 | 61.16 |
| TraesCS3A01G128600.1 | Wheat | mitochondrion | 45.52 | 40.97 |
| CDY28560 | Canola | endoplasmic reticulum | 25.81 | 37.7 |
| CDY16891 | Canola | golgi, plasma membrane, vacuole | 77.78 | 27.3 |
| TraesCS7A01G078500.1 | Wheat | cytosol | 38.71 | 12.47 |
| TraesCS4A01G376700.1 | Wheat | cytosol | 39.78 | 12.39 |
| TraesCS6A01G017500.2 | Wheat | cytosol, plastid | 38.71 | 11.82 |
| TraesCS6A01G326200.1 | Wheat | plastid | 36.2 | 11.23 |
Protein Annotations
| Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | MapMan:50.1.6 | InterPro:Fd_Rdtase_FAD-bd | InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPR017927 |
| InterPro:NADH-Cyt_B5_reductase | InterPro:OxRdtase_FAD-bd_dom | InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PFAM:PF00970 | PRINTS:PR00371 |
| PRINTS:PR00406 | PFscan:PS51384 | PANTHER:PTHR19370 | PANTHER:PTHR19370:SF175 | InterPro:Riboflavin_synthase-like_b-brl | SUPFAM:SSF52343 |
| SUPFAM:SSF63380 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3A01G338700 | EnsemblPlants:TraesCS3A01G338700.1 | TIGR:cd06183 | SEG:seg |
Description
No Description!
Coordinates
chr3A:-:585474257..585477940
Molecular Weight (calculated)
31015.8 Da
IEP (calculated)
8.588
GRAVY (calculated)
-0.190
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFLQGQSVE TMVAVAVAVV AVAVGGALLL RRSKRPKGCL DPENFKKFKL VEKTQISHNV AKFRFALPTP TSVLGLPIGQ HISCRGQDAT GEEVIKPYTP
101: TTLDSDLGNF QLVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDK TKVHLVYANV TPEDILLKEE
201: LDSLAEEYPD RFKIFYVLNQ PPEVWNGGVG FVSQDMIKTH CPAPAEDIQI LRCGPPPMNK AMAAHLEELG YTKEMQFQF
101: TTLDSDLGNF QLVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDK TKVHLVYANV TPEDILLKEE
201: LDSLAEEYPD RFKIFYVLNQ PPEVWNGGVG FVSQDMIKTH CPAPAEDIQI LRCGPPPMNK AMAAHLEELG YTKEMQFQF
001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
Arabidopsis Description
CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.