Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94933 | Soybean | mitochondrion | 85.25 | 98.34 |
| PGSC0003DMT400072515 | Potato | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 83.81 | 83.81 |
| Solyc10g081440.1.1 | Tomato | extracellular, plastid | 83.09 | 83.09 |
| AT5G17770.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 83.81 | 82.92 |
| TraesCS1B01G316400.1 | Wheat | unclear | 83.09 | 82.8 |
| VIT_08s0056g01150.t01 | Wine grape | endoplasmic reticulum | 82.01 | 82.31 |
| Bra006419.1-P | Field mustard | endoplasmic reticulum | 83.45 | 82.27 |
| CDX78759 | Canola | endoplasmic reticulum | 83.09 | 82.21 |
| EES03792 | Sorghum | endoplasmic reticulum | 82.37 | 82.08 |
| TraesCS1D01G305400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 82.37 | 82.08 |
| TraesCS3A01G338700.1 | Wheat | golgi | 82.37 | 82.08 |
| TraesCS1A01G305700.1 | Wheat | golgi | 82.37 | 82.08 |
| EES18413 | Sorghum | plastid | 82.37 | 82.08 |
| CDY38457 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 82.73 | 81.85 |
| TraesCS3D01G332300.1 | Wheat | unclear | 82.01 | 81.72 |
| TraesCS3B01G370400.1 | Wheat | endoplasmic reticulum | 82.01 | 81.72 |
| Os05t0488900-01 | Rice | endoplasmic reticulum | 82.37 | 81.21 |
| Bra002104.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 82.01 | 81.14 |
| GSMUA_Achr8P21540_001 | Banana | endoplasmic reticulum | 80.58 | 80.87 |
| CDY59316 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 81.3 | 80.43 |
| CDX70774 | Canola | endoplasmic reticulum | 78.42 | 80.15 |
| CDY02688 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 80.94 | 80.07 |
| Os01t0814900-01 | Rice | plasma membrane | 79.86 | 79.57 |
| Bra023636.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 71.58 | 79.28 |
| KRG89951 | Soybean | mitochondrion | 38.13 | 76.81 |
| CDY63711 | Canola | cytosol | 60.07 | 75.57 |
| Zm00001d038529_P003 | Maize | plasma membrane | 83.09 | 74.76 |
| Zm00001d043098_P002 | Maize | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 81.3 | 73.86 |
| KRG89948 | Soybean | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.05 | 73.57 |
| HORVU3Hr1G079960.7 | Barley | endoplasmic reticulum | 53.96 | 67.87 |
| KRH44741 | Soybean | endoplasmic reticulum, peroxisome, plastid | 67.27 | 62.96 |
| KRH13184 | Soybean | endoplasmic reticulum, peroxisome, plastid | 66.91 | 62.63 |
| Zm00001d017490_P001 | Maize | mitochondrion | 21.58 | 58.25 |
| KRH03716 | Soybean | mitochondrion | 41.37 | 36.05 |
| KRH56619 | Soybean | mitochondrion | 41.73 | 35.91 |
| CDY16891 | Canola | golgi, plasma membrane, vacuole | 83.45 | 29.18 |
| KRH18814 | Soybean | cytosol, mitochondrion, plastid | 28.06 | 17.03 |
| KRH16606 | Soybean | cytosol | 37.77 | 12.03 |
| KRH18816 | Soybean | cytosol, mitochondrion, peroxisome | 38.13 | 11.96 |
| KRH16605 | Soybean | cytosol | 37.77 | 11.85 |
| KRH53180 | Soybean | cytosol, mitochondrion, peroxisome | 37.77 | 11.8 |
Protein Annotations
| EntrezGene:100805390 | Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | MapMan:50.1.6 | UniProt:A0A0R0KKK6 | EMBL:ACUP02001302 |
| InterPro:Fd_Rdtase_FAD-bd | InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase | EnsemblPlantsGene:GLYMA_03G006900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004128 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:IPR017927 | EnsemblPlants:KRH64963 | ProteinID:KRH64963 | ProteinID:KRH64963.1 | InterPro:NADH-Cyt_B5_reductase |
| InterPro:OxRdtase_FAD-bd_dom | InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PFAM:PF00970 | PRINTS:PR00371 | PRINTS:PR00406 |
| PFscan:PS51384 | PANTHER:PTHR19370 | PANTHER:PTHR19370:SF175 | InterPro:Riboflavin_synthase-like_b-brl | SUPFAM:SSF52343 | SUPFAM:SSF63380 |
| TMHMM:TMhelix | UniParc:UPI0001D62E87 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:625777..630566
Molecular Weight (calculated)
30855.5 Da
IEP (calculated)
8.299
GRAVY (calculated)
-0.178
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFLQAQENQ ILVGVAVAVV AIGLGAVYLY SSKKTKGCLD PENFKAFKLV KRAQLSHNVA KFTFALPTPT SVLGLPIGQH ISCRGKDAQG EEVIKPYTPT
101: TLDSDVGHFE LVIKMYPQGR MSHHFREMRV GDYLSVKGPK GRFKYQPGEV RAFGMLAGGS GITPMFQVAR AILENPNDRT KVHLIYANVT YEDILLKEEL
201: DGLASNYPDR FKIYYVLNQP PEVWDGGEGF VSKEMIQTHC PAPAQDIKIL RCGPPPMNKA MAAHLEALGY ASEMQFQF
101: TLDSDVGHFE LVIKMYPQGR MSHHFREMRV GDYLSVKGPK GRFKYQPGEV RAFGMLAGGS GITPMFQVAR AILENPNDRT KVHLIYANVT YEDILLKEEL
201: DGLASNYPDR FKIYYVLNQP PEVWDGGEGF VSKEMIQTHC PAPAQDIKIL RCGPPPMNKA MAAHLEALGY ASEMQFQF
001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
Arabidopsis Description
CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.