Factsheet for Solyc10g081440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 1
mitochondrion 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072515	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	98.56	98.56
KRG94933	Soybean	mitochondrion	75.9	87.55
KRH64963	Soybean	endoplasmic reticulum	83.09	83.09
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	81.65	81.95
Bra002104.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.37	81.49
AT5G17770.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	82.01	81.14
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.01	81.14
Bra006419.1-P	Field mustard	endoplasmic reticulum	80.58	79.43
CDX78759	Canola	endoplasmic reticulum	80.22	79.36
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	79.86	79.0
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	79.5	78.65
TraesCS1B01G316400.1	Wheat	unclear	78.78	78.49
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	78.06	78.34
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.06	77.78
TraesCS1A01G305700.1	Wheat	golgi	78.06	77.78
CDX70774	Canola	endoplasmic reticulum	75.9	77.57
Bra023636.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	69.78	77.29
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	77.34	77.06
EES18413	Sorghum	plastid	76.62	76.34
TraesCS3A01G338700.1	Wheat	golgi	76.62	76.34
EES03792	Sorghum	endoplasmic reticulum	76.62	76.34
TraesCS3D01G332300.1	Wheat	unclear	76.62	76.34
Os05t0488900-01	Rice	endoplasmic reticulum	77.34	76.24
Os01t0814900-01	Rice	plasma membrane	75.18	74.91
CDY63711	Canola	cytosol	58.63	73.76
Zm00001d043098_P002	Maize	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	76.98	69.93
Zm00001d038529_P003	Maize	plasma membrane	77.34	69.58
HORVU3Hr1G079960.7	Barley	endoplasmic reticulum	51.44	64.71
Zm00001d017490_P001	Maize	mitochondrion	21.22	57.28
CDY28560	Canola	endoplasmic reticulum	27.7	40.31
Solyc05g018520.2.1	Tomato	plastid	41.73	35.91
CDY16891	Canola	golgi, plasma membrane, vacuole	82.37	28.8
Solyc11g013810.1.1	Tomato	cytosol, nucleus	35.61	10.86

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004128	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022900
GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927	UniProt:K4D331	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF97	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc10g081440.1
EnsemblPlants:Solyc10g081440.1.1	TMHMM:TMhelix	UniParc:UPI00027698E2	SEG:seg	:	:

Description

NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:K4D331]

Coordinates

chr10:-:62498437..62501303

Molecular Weight (calculated)

31140.7 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.226

Length

278 amino acids

Sequence
(BLAST)

001: MEFLERPDAQ LIIGVAVAAV AVGATAYFYF SSKKSKVCLN PEEFRAFKLV KRTQLSHNVA KFRFELPTPT SVLGLPIGQH ISCRGKDSQG EEVVKPYTPT
101: TLDSDIGYFE LVIKMYPQGR MSHHFREMRE GDYMEVKGPK GRFKYHPGQV RAFGMLAGGS GITPMFQVAR AILENPNDVT KVHLIYANVT SEDILLKEEL
201: EGLTVNYPDR FKVYYVLNQP PEEWSGGVGF VSKEMIQAHC PAPADDIKIL RCGPPPMNKA MAAHLEALGY SPEMQFQF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.