Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94933 | Soybean | mitochondrion | 65.16 | 59.75 |
| CDX70774 | Canola | endoplasmic reticulum | 67.87 | 55.15 |
| KRH64963 | Soybean | endoplasmic reticulum | 67.87 | 53.96 |
| HORVU1Hr1G068870.1 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 67.87 | 53.76 |
| CDX78759 | Canola | endoplasmic reticulum | 67.87 | 53.38 |
| CDY38457 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 67.42 | 53.02 |
| CDY63711 | Canola | cytosol | 52.94 | 52.94 |
| Bra006419.1-P | Field mustard | endoplasmic reticulum | 67.42 | 52.84 |
| VIT_08s0056g01150.t01 | Wine grape | endoplasmic reticulum | 65.61 | 52.35 |
| Bra002104.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 66.06 | 51.96 |
| PGSC0003DMT400072515 | Potato | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 65.16 | 51.8 |
| CDY59316 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 65.61 | 51.6 |
| Solyc10g081440.1.1 | Tomato | extracellular, plastid | 64.71 | 51.44 |
| CDY02688 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 65.16 | 51.25 |
| AT5G17770.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 64.25 | 50.53 |
| HORVU0Hr1G031690.1 | Barley | mitochondrion, nucleus, peroxisome | 35.29 | 47.56 |
| Bra023636.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 53.39 | 47.01 |
| HORVU3Hr1G024170.3 | Barley | mitochondrion | 37.56 | 26.69 |
| CDY28560 | Canola | endoplasmic reticulum | 18.1 | 20.94 |
| CDY16891 | Canola | golgi, plasma membrane, vacuole | 68.78 | 19.12 |
| HORVU6Hr1G003300.1 | Barley | mitochondrion | 33.03 | 7.68 |
| HORVU3Hr1G080010.1 | Barley | cytosol, peroxisome | 2.71 | 7.41 |
Protein Annotations
| Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | MapMan:35.1 | UniProt:A0A287LVJ4 | InterPro:Fd_Rdtase_FAD-bd | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004128 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009505 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0022900 | GO:GO:0030312 |
| GO:GO:0055114 | EnsemblPlantsGene:HORVU3Hr1G079960 | EnsemblPlants:HORVU3Hr1G079960.7 | InterPro:IPR017927 | InterPro:NADH-Cyt_B5_reductase | InterPro:OxRdtase_FAD-bd_dom |
| InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PFAM:PF00970 | PRINTS:PR00406 | PFscan:PS51384 | PANTHER:PTHR19370 |
| PANTHER:PTHR19370:SF175 | InterPro:Riboflavin_synthase-like_b-brl | SUPFAM:SSF52343 | SUPFAM:SSF63380 | UniParc:UPI000B46380F | SEG:seg |
Description
No Description!
Coordinates
chrchr3H:+:586407032..586408255
Molecular Weight (calculated)
24812.3 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.045
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: ILCFINQVQI LLEHSFCSWR VISCSLVSFL VLLLPTSGCL DPENFKKFKL VEKTQISHNV AKFRFALPTP ISVLGLPIGQ HISCRGQDAT GEEVIKPYTP
101: TTLDSDLGNF QLVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDK TKVHLVYANV TPEDILLKSS
201: GTETYPKHIY FATVDPLDQR Y
101: TTLDSDLGNF QLVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDK TKVHLVYANV TPEDILLKSS
201: GTETYPKHIY FATVDPLDQR Y
001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
Arabidopsis Description
CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.