Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006419.1-P | Field mustard | endoplasmic reticulum | 98.58 | 98.23 |
| CDX70774 | Canola | endoplasmic reticulum | 91.1 | 94.12 |
| CDY59316 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 91.81 | 91.81 |
| CDY38457 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 91.81 | 91.81 |
| CDY02688 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 91.81 | 91.81 |
| AT5G17770.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 90.75 | 90.75 |
| KRG94933 | Soybean | mitochondrion | 74.38 | 86.72 |
| KRH64963 | Soybean | endoplasmic reticulum | 82.21 | 83.09 |
| CDY63711 | Canola | cytosol | 64.06 | 81.45 |
| PGSC0003DMT400072515 | Potato | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 79.36 | 80.22 |
| Solyc10g081440.1.1 | Tomato | extracellular, plastid | 79.36 | 80.22 |
| TraesCS1B01G316400.1 | Wheat | unclear | 78.65 | 79.21 |
| EES18413 | Sorghum | plastid | 78.29 | 78.85 |
| TraesCS1A01G305700.1 | Wheat | golgi | 77.94 | 78.49 |
| TraesCS1D01G305400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 77.94 | 78.49 |
| Os05t0488900-01 | Rice | endoplasmic reticulum | 78.65 | 78.37 |
| VIT_08s0056g01150.t01 | Wine grape | endoplasmic reticulum | 76.87 | 77.98 |
| GSMUA_Achr8P21540_001 | Banana | endoplasmic reticulum | 76.51 | 77.62 |
| EES03792 | Sorghum | endoplasmic reticulum | 76.87 | 77.42 |
| TraesCS3D01G332300.1 | Wheat | unclear | 76.51 | 77.06 |
| TraesCS3B01G370400.1 | Wheat | endoplasmic reticulum | 76.51 | 77.06 |
| TraesCS3A01G338700.1 | Wheat | golgi | 76.51 | 77.06 |
| Os01t0814900-01 | Rice | plasma membrane | 75.44 | 75.99 |
| Zm00001d038529_P003 | Maize | plasma membrane | 77.58 | 70.55 |
| Zm00001d043098_P002 | Maize | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 75.44 | 69.28 |
| HORVU3Hr1G079960.7 | Barley | endoplasmic reticulum | 53.38 | 67.87 |
| Zm00001d017490_P001 | Maize | mitochondrion | 20.28 | 55.34 |
| CDY28560 | Canola | endoplasmic reticulum | 29.54 | 43.46 |
| CDX87505 | Canola | cytosol, mitochondrion, peroxisome, plastid | 33.81 | 34.05 |
| CDY16891 | Canola | golgi, plasma membrane, vacuole | 92.17 | 32.58 |
| CDY26836 | Canola | cytosol | 32.03 | 16.16 |
| CDY68886 | Canola | cytosol, mitochondrion | 34.16 | 13.21 |
| CDX88386 | Canola | cytosol, plastid | 36.3 | 11.41 |
| CDX68044 | Canola | plastid | 35.23 | 10.88 |
| CDX79234 | Canola | plastid | 34.88 | 10.76 |
| CDX87504 | Canola | cytosol | 6.05 | 3.29 |
Protein Annotations
| Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | MapMan:50.1.6 | GO:A0A078CRT0 | EnsemblPlants:CDX78759 | ProteinID:CDX78759 |
| ProteinID:CDX78759.1 | InterPro:Fd_Rdtase_FAD-bd | InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004128 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00130197001 | InterPro:IPR017927 |
| InterPro:NADH-Cyt_B5_reductase | InterPro:OxRdtase_FAD-bd_dom | InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PFAM:PF00970 | PRINTS:PR00371 |
| PRINTS:PR00406 | PFscan:PS51384 | PANTHER:PTHR19370 | PANTHER:PTHR19370:SF175 | InterPro:Riboflavin_synthase-like_b-brl | SUPFAM:SSF52343 |
| SUPFAM:SSF63380 | TMHMM:TMhelix | UniParc:UPI0004EE038A | : | : | : |
Description
BnaA03g06710D
Coordinates
chrLK031815:-:2112961..2115206
Molecular Weight (calculated)
31364.3 Da
IEP (calculated)
8.559
GRAVY (calculated)
-0.131
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEFLRTLD PQILLGVFVA LVAIGAGAAY YLSSSKKRRG CLDPEKFKEF KLVKKQQLSH NVAKFVFELP TPTSVLGLPI GQHISCRGKD AQGEEVIKPY
101: TPTTLDSDLG RFELVIKMYP QGRMSHHFRE MLVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT YKTKVHLVYA NVTYDDILLK
201: DELDSLTSNY PDQFKIYYVL NQPPEVWDGG VGFVTKEMIQ AHCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMLFQ F
101: TPTTLDSDLG RFELVIKMYP QGRMSHHFRE MLVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT YKTKVHLVYA NVTYDDILLK
201: DELDSLTSNY PDQFKIYYVL NQPPEVWDGG VGFVTKEMIQ AHCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMLFQ F
001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
Arabidopsis Description
CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [extracellular,cytosol,peroxisome,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]
SUBAcon: [extracellular,cytosol,peroxisome,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.