CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78759	Canola	endoplasmic reticulum	94.12	91.1
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	90.81	87.9
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	90.44	87.54
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	90.44	87.54
AT5G17770.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	88.97	86.12
KRG94933	Soybean	mitochondrion	72.43	81.74
CDY63711	Canola	cytosol	66.18	81.45
KRH64963	Soybean	endoplasmic reticulum	80.15	78.42
PGSC0003DMT400072515	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	77.94	76.26
Solyc10g081440.1.1	Tomato	extracellular, plastid	77.57	75.9
EES18413	Sorghum	plastid	76.1	74.19
Os05t0488900-01	Rice	endoplasmic reticulum	76.84	74.11
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	75.37	74.01
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	75.37	74.01
TraesCS1B01G316400.1	Wheat	unclear	75.74	73.84
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	75.0	73.12
TraesCS1A01G305700.1	Wheat	golgi	75.0	73.12
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	74.63	72.76
TraesCS3A01G338700.1	Wheat	golgi	74.63	72.76
TraesCS3D01G332300.1	Wheat	unclear	74.63	72.76
EES03792	Sorghum	endoplasmic reticulum	73.9	72.04
Os01t0814900-01	Rice	plasma membrane	73.53	71.68
HORVU3Hr1G079960.7	Barley	endoplasmic reticulum	55.15	67.87
Zm00001d038529_P003	Maize	plasma membrane	75.0	66.02
Zm00001d043098_P002	Maize	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.16	65.03
Zm00001d017490_P001	Maize	mitochondrion	15.07	39.81
CDY28560	Canola	endoplasmic reticulum	25.37	36.13
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	33.09	32.26
CDY16891	Canola	golgi, plasma membrane, vacuole	91.18	31.2
CDY26836	Canola	cytosol	31.62	15.44
CDY68886	Canola	cytosol, mitochondrion	33.46	12.52
CDX88386	Canola	cytosol, plastid	35.29	10.74
CDX68044	Canola	plastid	34.56	10.33
CDX79234	Canola	plastid	34.19	10.21
CDX87504	Canola	cytosol	5.88	3.09

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	GO:A0A078C3K4	EnsemblPlants:CDX70774	ProteinID:CDX70774
ProteinID:CDX70774.1	InterPro:Fd_Rdtase_FAD-bd	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00140654001	InterPro:IPR017927	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF175	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004EEA657
SEG:seg	:	:	:	:	:

Description

BnaC03g08580D

Coordinates

chrLK031791:-:1975395..1977595

Molecular Weight (calculated)

30516.1 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.266

Length

272 amino acids

Sequence
(BLAST)

001: MDIEFLRTLD PQILLGVFVA LVAVGAGAAY YLSSSSKKRR GCLDPEKFKE FKLVKKQQLS HNVAKFVFEL PTPTSVLGLP IGQHISCRGK DAQGEEVIKP
101: YTPTTLDSDL GRFELVIKMY PQGRMSHHFR EMRVGDHLAV KGPKGRFKYQ PGQFRAFGML AGGSGITPMF QVARAILENP TDKTKVHLIY ANVTYDDILL
201: KDELDSLTSN YPDQFKIYYV LNQPPETWDG GHPIFRQNLP SSILRCGPPP MNKAMAANLE ALGYSPEMQF QF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.