Factsheet for TraesCS1B01G316400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	99.28	99.28
TraesCS1A01G305700.1	Wheat	golgi	99.28	99.28
HORVU1Hr1G068870.1	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	98.92	98.92
HORVU0Hr1G031690.1	Barley	mitochondrion, nucleus, peroxisome	58.06	98.78
EES18413	Sorghum	plastid	91.04	91.04
Os05t0488900-01	Rice	endoplasmic reticulum	90.32	89.36
KRG94933	Soybean	mitochondrion	74.55	86.31
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	85.66	85.66
KRH64963	Soybean	endoplasmic reticulum	82.8	83.09
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	81.72	82.31
Zm00001d038529_P003	Maize	plasma membrane	90.68	81.88
Solyc10g081440.1.1	Tomato	extracellular, plastid	78.49	78.78
PGSC0003DMT400072515	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.49	78.78
Bra006419.1-P	Field mustard	endoplasmic reticulum	79.57	78.72
CDX78759	Canola	endoplasmic reticulum	79.21	78.65
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.85	78.29
AT5G17770.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	78.49	77.94
Bra002104.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.49	77.94
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.49	77.94
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.14	77.58
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	76.7	77.26
CDX70774	Canola	endoplasmic reticulum	73.84	75.74
Bra023636.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	68.1	75.7
CDY63711	Canola	cytosol	58.42	73.76
CDY28560	Canola	endoplasmic reticulum	27.96	40.84
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	44.44	40.13
CDY16891	Canola	golgi, plasma membrane, vacuole	79.21	27.8
TraesCS6B01G024900.1	Wheat	cytosol, plastid	37.99	11.6
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	34.77	10.81

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371
PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF175	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G316400	EnsemblPlants:TraesCS1B01G316400.1	TIGR:cd06183	SEG:seg

Description

No Description!

Coordinates

chr1B:+:540991170..540994048

Molecular Weight (calculated)

30973.6 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.187

Length

279 amino acids

Sequence
(BLAST)

001: MEFLQGQSTE TTVAVAVAVV AVAAGAGFLL LRSKKPKGCL DAENFKEFKL VQKRQISHNV AKFKFALPTP TSVLGLPIGQ HISCRGQDAT GEEVIKPYTP
101: TTLDSDIGYF ELVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQPGQ VRAFGMIAGG SGITPMFQVT RAILENPNDN TKVHLIYANV TYDDILLLEE
201: LDNMAKNYPD RFKIYYVLNQ PPEVWDGGVG FVSKEMIQAH CPAPAADIQI LRCGPPPMNK AMAANLDDLG YTKEMQFQF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.