Factsheet for TraesCS3B01G147600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, unclear
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT5G20080.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT5G20080.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G129500.1	Wheat	mitochondrion	99.03	99.03
TraesCS3A01G128600.1	Wheat	mitochondrion	99.03	98.71
HORVU3Hr1G024170.3	Barley	mitochondrion	95.47	94.86
Os01t0174300-01	Rice	mitochondrion	89.97	89.39
EES00217	Sorghum	mitochondrion	89.32	88.75
Zm00001d039656_P003	Maize	mitochondrion	87.38	86.82
GSMUA_Achr10P...	Banana	mitochondrion	76.38	71.3
VIT_11s0016g04970.t01	Wine grape	mitochondrion	74.11	70.25
KRH56619	Soybean	mitochondrion	69.26	66.25
KRH03716	Soybean	mitochondrion	68.28	66.14
Solyc05g018520.2.1	Tomato	plastid	68.28	65.33
AT5G20080.1	Thale cress	mitochondrion	68.28	64.33
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	41.1	45.52
TraesCS1B01G316400.1	Wheat	unclear	40.13	44.44
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	35.92	12.37
TraesCS6B01G024900.1	Wheat	cytosol, plastid	35.28	11.93

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009628	GO:GO:0009651	GO:GO:0016491	GO:GO:0030312
GO:GO:0055114	InterPro:IPR017927	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF174
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS3B01G147600	EnsemblPlants:TraesCS3B01G147600.1	TIGR:cd06183
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:139032314..139036929

Molecular Weight (calculated)

33786.9 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.229

Length

309 amino acids

Sequence
(BLAST)

001: MAALLMRRLA GTYRGRAPLA AAAVGGAALF YASSNPTIAH MEEKGEDAAA KVALNPEKWL EFKLQEKATV SHDSELFRFS FDPSTKLGLD VASCLVTRAP
101: IGQEVEGKRK YVIRPYTPIS DPDSKGYFDL LIKVYPEGKM SQHFANLKPG DVLEVKGPIE KLRYSPNMKR QIGMVAGGTG ITPMLQVVRA ILKNPDDNTQ
201: VSLIYANVSP DDILLKKELD RLASSYPNFK VFYTVDKPSS DWRGGVGYIS KDMVLKGLPG PGEDSLILVC GPPGMMNHIS GDKAKDYSQG EVTGLLKDLG
301: YTADMVYKF

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.