CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	EER91265	AT4G26630.1	25387881
AT5G20080.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039656_P003	Maize	mitochondrion	95.18	95.18
Os01t0174300-01	Rice	mitochondrion	92.6	92.6
HORVU3Hr1G024170.3	Barley	mitochondrion	89.39	89.39
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	88.75	89.32
TraesCS3A01G128600.1	Wheat	mitochondrion	88.75	89.03
TraesCS3D01G129500.1	Wheat	mitochondrion	88.42	89.0
GSMUA_Achr10P...	Banana	mitochondrion	79.1	74.32
VIT_11s0016g04970.t01	Wine grape	mitochondrion	72.99	69.63
KRH03716	Soybean	mitochondrion	69.77	68.03
KRH56619	Soybean	mitochondrion	70.42	67.8
AT5G20080.1	Thale cress	mitochondrion	70.42	66.77
Solyc05g018520.2.1	Tomato	plastid	68.81	66.25
EES18413	Sorghum	plastid	40.51	45.16
EES03792	Sorghum	endoplasmic reticulum	40.19	44.8
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	36.33	12.67
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	35.37	11.94
OQU85223	Sorghum	cytosol	34.41	11.59

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	EntrezGene:8078471	UniProt:C5XND6	EnsemblPlants:EES00217
ProteinID:EES00217	ProteinID:EES00217.1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004128	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009628	GO:GO:0009651	GO:GO:0016491	GO:GO:0030312
GO:GO:0055114	InterPro:IPR017927	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51257	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF174	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3003G049200	SUPFAM:SSF52343	SUPFAM:SSF63380	unigene:Sbi.1306
UniParc:UPI0001A84597	RefSeq:XP_002455097.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:4507218..4512001

Molecular Weight (calculated)

33898.1 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.170

Length

311 amino acids

Sequence
(BLAST)

001: MAALLLRRLA GTHRGRVPLG AAAAAACGGA ALFYASSSPT VAYLEEKGEA AEKVALNPDK WLEFKLQDKA TVSHNSQLFR FSFDPSTKLG LDVASCLITR
101: APIGEEVEGR RKFVIRPYTP ISDPDSKGYF DLLIKVYPDG KMSQYFASLK PGDVLEVKGP IEKLRYSPNM KKQIGMIAGG TGITPMLQVV RAILKNPDDN
201: TQVSLIYANV SPDDILLKRE LDRLANSYPN FKVFYTVDKP STDWRGGVGF VSKDMVLKGL PGPAEDSLIL VCGPPGMMNH ISGDKAKDRS QGEVSGILKD
301: LGYTAEMVYK F

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.