CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017025_P001	Maize	cytosol	85.16	88.31
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	73.24	73.4
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	65.87	68.16
GSMUA_Achr8P23160_001	Banana	mitochondrion	49.73	67.11
GSMUA_Achr9P15480_001	Banana	cytosol	53.85	66.18
CDY68886	Canola	cytosol, mitochondrion	51.03	64.79
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	60.56	63.09
VIT_18s0001g03910.t01	Wine grape	plastid	61.86	62.82
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	60.56	62.81
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	18.85	62.37
Solyc11g013810.1.1	Tomato	cytosol, nucleus	61.11	61.84
PGSC0003DMT400077648	Potato	cytosol	60.89	61.69
CDX79234	Canola	plastid	60.35	61.14
Bra003670.1-P	Field mustard	plastid	60.13	60.99
CDX68044	Canola	plastid	60.02	60.88
Bra015656.1-P	Field mustard	cytosol	58.5	60.67
CDX88386	Canola	cytosol, plastid	58.72	60.63
KRH16606	Soybean	cytosol	57.31	60.6
KRH16605	Soybean	cytosol	57.96	60.38
Bra008333.1-P	Field mustard	plastid	59.15	60.26
AT1G37130.1	Thale cress	cytosol	59.37	59.76
AT1G77760.1	Thale cress	cytosol	58.94	59.32
KRH18814	Soybean	cytosol, mitochondrion, plastid	29.04	58.52
CDY26836	Canola	cytosol	34.67	57.45
CDX87504	Canola	cytosol	31.09	55.51
GSMUA_Achr3P07200_001	Banana	cytosol	61.97	50.84
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	21.99	44.42
GSMUA_Achr5P05830_001	Banana	cytosol	15.38	39.66
EES18413	Sorghum	plastid	11.05	36.56
EES03792	Sorghum	endoplasmic reticulum	11.05	36.56
EES00217	Sorghum	mitochondrion	11.59	34.41

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
EntrezGene:8055422	UniProt:A0A1Z5RNB1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006809	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0030151
GO:GO:0042128	GO:GO:0043546	GO:GO:0046872	GO:GO:0050464	GO:GO:0055114	InterPro:IPR001199
InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk
InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	EnsemblPlants:OQU85223	ProteinID:OQU85223	ProteinID:OQU85223.1	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174
PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	EnsemblPlantsGene:SORBI_3004G196101	SUPFAM:SSF52343
SUPFAM:SSF55856	SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	UniParc:UPI0001A85D5F	RefSeq:XP_002454083.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:54708104..54711338

Molecular Weight (calculated)

101624.0 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.348

Length

923 amino acids

Sequence
(BLAST)

001: MSTCVEPPTH LANLDPGAAA QRLPYPALPG DDVLRRSSVS GSSFVDVAAP VSSDGKKADD DASSSDDDDD EHQDDDHHRH ETYGSHYLRR RLGVEPSVQH
101: DPRDEGTADA WVERSASLIR LTGKHPFNGE PPLRRLMEHG FVTPAPLHYV RNHGPVPRGD WAAWTVEVAG LVRRPARLTM DELARGFRAL ELPVTLVCSS
201: NRRKEQNMAR QTLGFNWGPG AVSTSVWRGA RLRDVLRRCG GVVDDGDGGA LYVCFEGDED LPGGGGSKYG TSITRERALD PTMDVMLAYQ QNGGPLLPDH
301: GFPVRLIVPG CTAGRMVKWL RRIVVTRAES DNYYHYRDNR FLPSHVDAKL ADAQGWWYKP EYVINEMNTN SVITTPGHND FLPINAITTQ RTYTMKGFAY
401: SGGGKKVTRV EVTLDGGQTW LLCVLDHPEK PTKYGRCWCW CFWSIDVELA DLLACKEIAV RAWDQSLNTQ PEFLTWNLLG MMTNCWFRVK VNVCRPSNGE
501: IGLAFEHPVQ PGNQPGGWMA QQKHIESAEA AGAASPPALP PRSTSAATST TNTASNQFTM SEVRKHASKD SAWIVVHGHV YDCTEYLKDH PGGADSILIN
601: AGTDCTEEFD AIHSDKAKDL LGAYRIGDLL VTAAGTEQAS HSHLEHAPIG GPAPPVVVAL SNPREEKVPC RLVAKTVLSR DVRLFRFALP SSGQVLGLPV
701: GKHIFVCASI DGKLCMRAYT PTSSVDEVGH FDLLVKVYFK NENPKFPDGG RMTQYLDSLP IGARVDVKGP VGHVEYAGRG GLVIDGEPRR AGRLVMVAGG
801: SGITPIYQVI QAVLRDQPED PTEMHLVYAN RTEDDILLRG ELDRWAAEYP DRLKVWYVIS QVKRPEEWKY SVGVVTEAIL REHVPEGGDG TLALVCGPPL
901: MIQFAVSPNL EKMKHHVDSV IVF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.