CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 2
plastid 1
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	KRH24006	AT3G48150.1	21798944
AT1G77760.1	KRH27971	AT3G48150.1	21798944
AT1G77760.1	KRH29310	AT3G48150.1	21798944
AT1G77760.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16605	Soybean	cytosol	83.18	83.18
KRH16606	Soybean	cytosol	79.8	80.99
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	80.47	80.11
CDY68886	Canola	cytosol, mitochondrion	64.22	78.27
VIT_18s0001g03910.t01	Wine grape	plastid	80.02	78.0
Solyc11g013810.1.1	Tomato	cytosol, nucleus	77.2	75.0
PGSC0003DMT400077648	Potato	cytosol	77.09	74.97
KRH18814	Soybean	cytosol, mitochondrion, plastid	38.71	74.89
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	23.36	74.19
Bra008333.1-P	Field mustard	plastid	75.62	73.95
Bra003670.1-P	Field mustard	plastid	75.73	73.74
CDX79234	Canola	plastid	75.73	73.66
CDX68044	Canola	plastid	75.51	73.52
Bra015656.1-P	Field mustard	cytosol	73.48	73.15
AT1G37130.1	Thale cress	cytosol	75.62	73.06
CDX88386	Canola	cytosol, plastid	73.7	73.04
AT1G77760.1	Thale cress	cytosol	74.94	72.41
CDY26836	Canola	cytosol	45.37	72.17
GSMUA_Achr8P23160_001	Banana	mitochondrion	54.97	71.2
GSMUA_Achr9P15480_001	Banana	cytosol	59.37	70.04
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	71.67	68.95
TraesCS7A01G078500.1	Wheat	cytosol	66.7	68.24
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	67.04	68.2
Os08t0468100-01	Rice	plastid	69.98	67.69
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	51.47	67.56
Zm00001d031769_P001	Maize	mitochondrion	52.37	67.44
Os08t0468700-00	Rice	plastid	69.07	66.81
TraesCS4A01G376700.1	Wheat	cytosol	67.49	66.74
TraesCS6B01G024900.1	Wheat	cytosol, plastid	68.62	66.52
TraesCS6A01G017500.2	Wheat	cytosol, plastid	68.62	66.52
TraesCS6D01G020700.1	Wheat	cytosol, plastid	68.51	66.41
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	48.53	66.36
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	66.93	66.26
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	66.48	66.03
Os02t0770800-01	Rice	cytosol	66.25	66.03
TraesCS6A01G326200.1	Wheat	plastid	66.48	65.52
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	66.14	65.33
Zm00001d018206_P001	Maize	peroxisome	48.65	65.3
HORVU6Hr1G003300.1	Barley	mitochondrion	68.96	64.25
Zm00001d017025_P001	Maize	cytosol	62.53	62.25
OQU85223	Sorghum	cytosol	63.09	60.56
GSMUA_Achr3P07200_001	Banana	cytosol	67.83	53.42
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	23.02	44.64
KRG89951	Soybean	mitochondrion	6.66	42.75
KRG94933	Soybean	mitochondrion	11.29	41.49
GSMUA_Achr5P05830_001	Banana	cytosol	16.48	40.78
KRH64963	Soybean	endoplasmic reticulum	11.96	38.13
KRH44741	Soybean	endoplasmic reticulum, peroxisome, plastid	12.53	37.37
KRH13184	Soybean	endoplasmic reticulum, peroxisome, plastid	12.42	37.04
KRH03716	Soybean	mitochondrion	12.64	35.11
KRH56619	Soybean	mitochondrion	12.75	34.98
KRG89948	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	5.3	33.57

Protein Annotations

EntrezGene:100813471	Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80
Gene3D:3.90.420.10	EMBL:ACUP02008135	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	EnsemblPlantsGene:GLYMA_13G084000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006809	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009703	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037
GO:GO:0030151	GO:GO:0042128	GO:GO:0043546	GO:GO:0046872	GO:GO:0050464	GO:GO:0055114
UniProt:I1LW34	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set
EnsemblPlants:KRH18816	ProteinID:KRH18816	ProteinID:KRH18816.1	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase
InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS
PFAM:PF00173	PFAM:PF00174	PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233
PRINTS:PR00363	PRINTS:PR00371	PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559
PFscan:PS50255	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117
SUPFAM:SSF52343	SUPFAM:SSF55856	SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	UniParc:UPI000233B7DA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:19466653..19471575

Molecular Weight (calculated)

99765.3 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.418

Length

886 amino acids

Sequence
(BLAST)

001: MAASVDNRQY GTHINAVVRA CGPDFNTPLP SDFDLDSSSD DEDQNDDASY LKELIQKANA ETEASLLDPR DEGTADQWIP RNASMVRLTG KHPFNAEAPL
101: PRLMHHGFIT PSPLHYVRNH GPVPKIKWDE WTVEVTGLVK RSTHFTMEKL MREFPHREFP ATLVCAGNRR KEHNMVKQSI GFNWGAAGAS TSVWRGVPLR
201: HVLKRCGILA RMKGAMYVSF EGAEDLPGGG GSKYGTSVKR EMAMDPSRDI ILAFMQNGEP LAPDHGFPVR MIIPGFIGGR MVKWLKRIVV TEHECDSHYH
301: YKDNRVLPSH VDAELANDEG WWYKPEYIIN ELNINSVITT PCHEEILPIN SWTTQRPYVI RGYAYSGGGR KVTRVEVTLD GGETWHVCTL DHTEKPNKYG
401: KYWCWCFWSL EVEVLDLLGA KEIAVRAWDE GLNTQPEHLI WNVMGMMNNC WFRVKTNVCK PHKGEIGIVF EHPTQPGNQP GGWMAKEKHL EKSQKPKPTL
501: KKSVSTPFMN TSSKMFSISE VKKHSNPDSA WIIVHGHVYD CTRFLKDHPG GTDSILINAG TDCTEEFDAI HSDKAKKLLE DYRIGELITT GYTSDSSPNN
601: SVHGNSEFTH LAPIKETTTP PSRSVALNPR EKIPCKLVSK TSISHDARLF RFALPSEDQL LGLSVGKHIF LCATIDGKLC MRAYTPTSSV DEVGFFDLLI
701: KVYFKGVHPK FPNGGLMSQH LDSLPIGSML DVKGPLGHIE YTGRGNFMVH GKPRFAKRLA MLAGGTGITP IYQVAQAILK DPEDHTEMHV VYANRTEDDI
801: LLREELDEWA KIHNDRFKLW YVVEIAKEGW KYSVGFITES ITREHLPKAS RDSLALTCGP PPMIQFAVQP NLEKMGYDIK NDLLVF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.