Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70805 | Canola | nucleus | 56.25 | 59.8 |
| Os06t0679100-00 | Rice | plastid | 26.88 | 48.31 |
| CDY58069 | Canola | nucleus | 57.5 | 41.26 |
| KRH24006 | Soybean | cytosol | 70.62 | 38.37 |
| KRH27971 | Soybean | nucleus | 69.06 | 38.3 |
| KRH77487 | Soybean | nucleus | 68.75 | 38.06 |
| CDY58070 | Canola | cytosol | 57.19 | 36.97 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 65.31 | 36.22 |
| CDY36901 | Canola | cytosol | 55.62 | 35.53 |
| PGSC0003DMT400063189 | Potato | cytosol | 59.06 | 34.74 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 61.88 | 34.32 |
| CDY44976 | Canola | cytosol | 53.12 | 33.66 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 58.12 | 32.29 |
| Bra033769.1-P | Field mustard | nucleus | 57.19 | 31.66 |
| Bra018081.1-P | Field mustard | cytosol | 56.88 | 31.43 |
| AT3G48150.1 | Thale cress | cytosol | 55.31 | 30.57 |
| Os02t0656300-01 | Rice | cytosol | 49.38 | 26.47 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 49.06 | 26.21 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 48.75 | 26.04 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 48.75 | 26.04 |
| Zm00001d017475_P002 | Maize | cytosol | 48.12 | 25.71 |
| GSMUA_Achr11P... | Banana | cytosol | 48.12 | 25.5 |
| EES07517 | Sorghum | cytosol | 47.5 | 25.33 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 48.75 | 24.04 |
| HORVU0Hr1G027080.4 | Barley | plastid | 40.31 | 21.5 |
| KRH41728 | Soybean | extracellular, vacuole | 0.62 | 4.26 |
| KRH18292 | Soybean | nucleus | 8.44 | 3.57 |
| KRG93804 | Soybean | cytosol | 8.44 | 3.57 |
| KRH01476 | Soybean | cytosol | 7.5 | 3.17 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A0R0HFA1 | EMBL:ACUP02006797 | InterPro:APC8 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_11G109200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030071 | InterPro:IPR011990 | EnsemblPlants:KRH29310 |
| ProteinID:KRH29310 | ProteinID:KRH29310.1 | PFAM:PF04049 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | TMHMM:TMhelix |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0006EDEA12 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:8333069..8334504
Molecular Weight (calculated)
36341.7 Da
IEP (calculated)
7.260
GRAVY (calculated)
-0.087
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKDSCRTE LRIAIRQLSD RCLYSASKWA AEQLVGIEED PAKFTPSNTR FQRGSSRICR KSRTHETAAV ITPVVGVLYD ATPVNVMEKD ELVDGDFYLW
101: QSPISVAVSI RQLLMFFVRT NRKEISVLAL LCSLSGQYSG FILCSLLWIE CGFSFVGFCV FVAGEKQKEE ETIELGGPLG KSDAINHELV SLERELSTIR
201: KNGKVDPFCL YLYGLVLKQK GNENLACTVL VESVNYYPWN WNAWTKLQSL CKKVDILNSL NLNSHWMKDF FLASVYQELR MHNDSLSKYE YLLGTFGYSN
301: YLQAQIAKVQ YSLREFAAAD
101: QSPISVAVSI RQLLMFFVRT NRKEISVLAL LCSLSGQYSG FILCSLLWIE CGFSFVGFCV FVAGEKQKEE ETIELGGPLG KSDAINHELV SLERELSTIR
201: KNGKVDPFCL YLYGLVLKQK GNENLACTVL VESVNYYPWN WNAWTKLQSL CKKVDILNSL NLNSHWMKDF FLASVYQELR MHNDSLSKYE YLLGTFGYSN
301: YLQAQIAKVQ YSLREFAAAD
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.