CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93804	Soybean	cytosol	95.9	95.9
KRH01476	Soybean	cytosol	81.51	81.61
KRH41728	Soybean	extracellular, vacuole	4.89	78.72
VIT_11s0016g03260.t01	Wine grape	cytosol	71.73	71.35
PGSC0003DMT400006585	Potato	cytosol	66.84	66.06
PGSC0003DMT400083452	Potato	cytosol	8.98	61.26
GSMUA_Achr1P19740_001	Banana	cytosol	60.77	61.17
Os06t0622500-00	Rice	cytosol	30.38	60.53
KXG33895	Sorghum	cytosol	55.35	55.57
TraesCS7A01G398600.1	Wheat	cytosol	55.35	55.28
Zm00001d042523_P001	Maize	cytosol	54.69	55.13
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	52.58	55.12
TraesCS7D01G392900.2	Wheat	cytosol	55.09	55.01
HORVU7Hr1G093620.9	Barley	cytosol	52.71	52.99
KRH27971	Soybean	nucleus	13.74	18.02
KRH77487	Soybean	nucleus	13.61	17.82
KRH24006	Soybean	cytosol	12.55	16.13
KRH29310	Soybean	cytosol	3.57	8.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804373	MapMan:13.3.4.1.1.2.1	EMBL:ACUP02008055	EnsemblPlantsGene:GLYMA_13G049400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1LWZ1	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH18292	ProteinID:KRH18292	ProteinID:KRH18292.1	PFAM:PF00515	PFAM:PF12895	PFAM:PF13181
PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF13
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000233C2F3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:14530711..14541210

Molecular Weight (calculated)

84285.2 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.329

Length

757 amino acids

Sequence
(BLAST)

001: MEAILVDCAQ KSLRHFMHSN AIFISQRLCA QFPSETNLQL LAGCYLQSNQ AYCAYHILKG TQMAQSRYLF AISCFHMDLL SEAEAALRPA DEPGAEVPNG
101: AAGHYLLGLI YRCTDRRKNA IQHFKQALSM DPLMWAAYEE LCILGAAEEA TVVFGEAAAF CLQKQYLNCS TSPNSHMSPE HSNEVAARPC MSEEASPRQL
201: KQMQSLKDIA TYHHGASILG GAAGQPINSS SSNMSYYNTP SPMVAQLSSV APPPLCRNVL PNGQNLTTLS TDSSPKSTVN SPIQAPRRKF VGEGKLRKIS
301: GRLFSDSGPR RSSRLSSDSS VNTNANSTVV SGNGTNNSYK GGSKLNHMAF RTMAIRKGQS WANENIDEGI CNDVPDDSSL NRTSINSCSS PVIEAKSYEQ
401: EAATFHIGGQ VTSGSKVITG TSEILTLLRV LGEGYRLACL YRCQDALDTY LKLPQKHYNT GWVLSQVGKA YFELVDYLEA DCAFSRARQI TPYSLEGMDI
501: HSTVLYHLKE DMKLSYLAQE LISTDRLAPQ SWCAMGNCYS LQKDHETALK NFQRAVQLNP RFAYAHTLCG HEYVALEDFE NGIKCYHSAL RVDSRHYNAW
601: YGLGMLYLRQ EKYEFSEHHF HMAYQINPRS SVILSYLGTA LHALKRSGEA LAIMEKAILE DKKNPLPMYQ KASILVSLER IDEALDVLEE LKEAQPRESS
701: VYALMGNIYR RRHMHERAMF HYGVALDLKP SITDAAMIKA AVEKLIIPDE FQDEDDS

Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)

001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP

Arabidopsis Description

CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.