Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0622500-00 | Rice | cytosol | 36.04 | 71.32 |
| KRH41728 | Soybean | extracellular, vacuole | 3.99 | 63.83 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 61.04 | 63.57 |
| Zm00001d042523_P001 | Maize | cytosol | 63.16 | 63.25 |
| VIT_11s0016g03260.t01 | Wine grape | cytosol | 63.96 | 63.21 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 63.56 | 63.06 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 63.3 | 62.8 |
| KXG33895 | Sorghum | cytosol | 62.5 | 62.33 |
| KRH01476 | Soybean | cytosol | 62.5 | 62.17 |
| Bra039034.1-P | Field mustard | cytosol | 60.11 | 60.83 |
| CDY35917 | Canola | cytosol | 60.11 | 60.83 |
| Solyc03g061590.2.1 | Tomato | cytosol | 14.63 | 60.77 |
| KRH18292 | Soybean | nucleus | 61.17 | 60.77 |
| CDY40468 | Canola | cytosol | 59.97 | 60.62 |
| KRG93804 | Soybean | cytosol | 60.9 | 60.5 |
| PGSC0003DMT400006585 | Potato | cytosol | 60.77 | 59.66 |
| AT2G20000.1 | Thale cress | cytosol | 58.91 | 59.54 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 59.31 | 59.23 |
| PGSC0003DMT400083452 | Potato | cytosol | 8.64 | 58.56 |
| Solyc03g061600.2.1 | Tomato | endoplasmic reticulum | 47.47 | 54.84 |
| CDY30158 | Canola | cytosol | 46.28 | 48.74 |
| CDX97740 | Canola | cytosol | 46.01 | 48.53 |
| AT3G16320.1 | Thale cress | cytosol | 46.41 | 47.94 |
| CDY35918 | Canola | cytosol | 15.29 | 46.37 |
| Bra027173.1-P | Field mustard | cytosol | 44.95 | 43.06 |
| GSMUA_Achr11P... | Banana | cytosol | 14.63 | 18.21 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr1G19740_001 |
| EnsemblPlants:GSMUA_Achr1P19740_001 | EnsemblPlants:GSMUA_Achr1T19740_001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M0S1D2 |
| PFAM:PF00515 | PFAM:PF12895 | PFAM:PF13181 | PFAM:PF13432 | PFAM:PF14559 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0002962EEF | SEG:seg | : |
Description
Cell division cycle protein 27 homolog B [Source:GMGC_GENE;Acc:GSMUA_Achr1G19740_001]
Coordinates
chr1:-:14785176..14798650
Molecular Weight (calculated)
84070.6 Da
IEP (calculated)
6.348
GRAVY (calculated)
-0.305
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: METLMVDRVQ SSLRLLMYSN AIFLCERLCA EFPSELNLQL LATCYLLNNQ AYCAYQILKG TKMPQSRYLF AVSCFRMNLL HEAEAALCPI NEPNAEASGH
101: YLLGLIYRFT GRRAYAIDHF TQALAIDPLL WAAYEELCAL GAVEESNEYF NDVSAQRIQQ HLSDSSSHNS STGSEYCSLP PSAAVNSVDS IPRQSKQFLA
201: NSTREISTLQ QGVVFAKVQT TNSGTSNLSQ FNTPSPAATQ LSGVAPPPLC RNAQVFLNAA SSDGSMKSNL NLAVQAPRRK FMDEGKLRKV SGRLFSDSGP
301: RRSTRLSAEA SIIANSNAPQ VGGNGSNHSA KFLGGLSSSS SAKANLASSR SLTFKKGQSW IAESFEEGRR PEIFDDSRTE NMATTSSSIS MSADGRCLEQ
401: GKATGDLAHD SRLMSGTQEL LGLLRIFGEG YRLSCLYRCQ QEALEVYLQL SQKQFNTGWV LSQVGRAHFE LVDYFEADHF FELARRVSPC TLEGMDTYST
501: VLYHLKEEMK LSYLAQELIS VDRLSPQAWC ALGNCYSLQK DHETALKNFQ RAVHLDPRFA YAHTLCGHEY VTLEDFENGI KCYQSALQAD DRHYNSWYGL
601: GVVYLRQEKF EFAEHHLRRA YNINPRSSVL MCYLGMALHS LKRNQEALEI MEQAISADKQ NPLPVYQKAN ILVSLERYDE ALKELDQLSE SAPHESSIYA
701: LMGKIYKRLE MHEKAMFYFG LALDLKPPAA DVATIKAAME KLYLPDEMDD NL
101: YLLGLIYRFT GRRAYAIDHF TQALAIDPLL WAAYEELCAL GAVEESNEYF NDVSAQRIQQ HLSDSSSHNS STGSEYCSLP PSAAVNSVDS IPRQSKQFLA
201: NSTREISTLQ QGVVFAKVQT TNSGTSNLSQ FNTPSPAATQ LSGVAPPPLC RNAQVFLNAA SSDGSMKSNL NLAVQAPRRK FMDEGKLRKV SGRLFSDSGP
301: RRSTRLSAEA SIIANSNAPQ VGGNGSNHSA KFLGGLSSSS SAKANLASSR SLTFKKGQSW IAESFEEGRR PEIFDDSRTE NMATTSSSIS MSADGRCLEQ
401: GKATGDLAHD SRLMSGTQEL LGLLRIFGEG YRLSCLYRCQ QEALEVYLQL SQKQFNTGWV LSQVGRAHFE LVDYFEADHF FELARRVSPC TLEGMDTYST
501: VLYHLKEEMK LSYLAQELIS VDRLSPQAWC ALGNCYSLQK DHETALKNFQ RAVHLDPRFA YAHTLCGHEY VTLEDFENGI KCYQSALQAD DRHYNSWYGL
601: GVVYLRQEKF EFAEHHLRRA YNINPRSSVL MCYLGMALHS LKRNQEALEI MEQAISADKQ NPLPVYQKAN ILVSLERYDE ALKELDQLSE SAPHESSIYA
701: LMGKIYKRLE MHEKAMFYFG LALDLKPPAA DVATIKAAME KLYLPDEMDD NL
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.