Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g062680.2.1 | Tomato | cytosol | 84.1 | 85.86 |
| PGSC0003DMT400040024 | Potato | cytosol | 84.1 | 85.86 |
| TraesCS1D01G427200.2 | Wheat | cytosol | 85.13 | 85.13 |
| TraesCS1A01G419400.1 | Wheat | cytosol | 83.59 | 83.59 |
| Os05t0579800-01 | Rice | cytosol | 86.15 | 83.58 |
| EES19889 | Sorghum | cytoskeleton, cytosol, nucleus | 85.64 | 83.08 |
| Zm00001d009440_P001 | Maize | cytoskeleton, cytosol, nucleus | 84.62 | 82.09 |
| VIT_04s0023g01940.t01 | Wine grape | cytosol | 80.51 | 81.77 |
| TraesCS1B01G449500.1 | Wheat | cytoskeleton, cytosol, nucleus | 84.62 | 81.68 |
| KRH69898 | Soybean | cytosol | 79.49 | 80.73 |
| KRH08242 | Soybean | cytosol | 78.97 | 80.21 |
| Zm00001d038881_P001 | Maize | cytoskeleton, cytosol, nucleus | 81.03 | 79.8 |
| AT2G18290.1 | Thale cress | nucleus | 78.46 | 79.69 |
| CDY29224 | Canola | cytosol | 77.95 | 79.17 |
| CDY20922 | Canola | cytosol | 77.95 | 79.17 |
| Bra024475.1-P | Field mustard | cytosol | 77.95 | 79.17 |
| TraesCS6D01G354500.1 | Wheat | cytosol | 80.51 | 76.96 |
| TraesCS6B01G407600.1 | Wheat | cytosol | 78.97 | 75.49 |
| CDY25160 | Canola | nucleus | 53.33 | 72.22 |
| HORVU1Hr1G091550.1 | Barley | cytosol, nucleus | 83.59 | 71.49 |
| HORVU5Hr1G110350.1 | Barley | cytosol, nucleus, plastid | 32.82 | 59.81 |
| KRG99106 | Soybean | nucleus | 30.26 | 48.36 |
| KRH49548 | Soybean | mitochondrion, plastid | 27.69 | 30.34 |
Protein Annotations
| MapMan:13.3.4.1.1.3.2 | Gene3D:2.60.120.260 | InterPro:APC10/Doc1 | InterPro:APC_su10/DOC_dom | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005680 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010087 | GO:GO:0016604 | GO:GO:0019538 | GO:GO:0031145 | GO:GO:0032875 |
| GO:GO:0032876 | GO:GO:0051301 | EnsemblPlantsGene:GSMUA_Achr1G03050_001 | EnsemblPlants:GSMUA_Achr1P03050_001 | EnsemblPlants:GSMUA_Achr1T03050_001 | InterPro:Galactose-bd-like_sf |
| InterPro:IPR004939 | InterPro:IPR008979 | UniProt:M0RWL3 | PFAM:PF03256 | PIRSF:PIRSF028841 | PFscan:PS51284 |
| PANTHER:PTHR12936 | SMART:SM01337 | SUPFAM:SSF49785 | UniParc:UPI000296A7C0 | SEG:seg | : |
Description
Anaphase-promoting complex subunit 10 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03050_001]
Coordinates
chr1:+:2460554..2463276
Molecular Weight (calculated)
21891.1 Da
IEP (calculated)
7.234
GRAVY (calculated)
-0.372
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MATESDGEEE TATAAGKLTG SPQLSVDDDL REMAKKAAWS VSSCKPGNGV LSLRDENLDT YWQSDGAQPH LVNIQFQKKV KLQLVVLYVD FKLDESYTPS
101: KISIRAGDGF HNLKEIKTVE LVKPVGWVHI SLSGNDPRET FIHTFMLQIA VLSNHLNGRD THIRQVKIYG PRPNPVPLQP FHFTSKEFIT YSILR
101: KISIRAGDGF HNLKEIKTVE LVKPVGWVHI SLSGNDPRET FIHTFMLQIA VLSNHLNGRD THIRQVKIYG PRPNPVPLQP FHFTSKEFIT YSILR
001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
Arabidopsis Description
APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.