Factsheet for PGSC0003DMT400040024

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006585
PGSC0003DMT400037076
PGSC0003DMT400037077
PGSC0003DMT400038358
PGSC0003DMT400046928
PGSC0003DMT400047444
PGSC0003DMT400051207
PGSC0003DMT400060963
PGSC0003DMT400063189
PGSC0003DMT400070712
PGSC0003DMT400076326
PGSC0003DMT400077428
PGSC0003DMT400078176
PGSC0003DMT400083452
PGSC0003DMT400084196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	PGSC0003DMT400038358	AT1G32310.1	20706207
AT2G18290.1	PGSC0003DMT400047444	AT2G04660.1	20706207
AT2G18290.1	PGSC0003DMT400006585	AT2G20000.1	17944809
AT2G18290.1	PGSC0003DMT400083452	AT2G20000.1	17944809
AT2G18290.1	PGSC0003DMT400006585	AT2G20000.1	20706207
AT2G18290.1	PGSC0003DMT400083452	AT2G20000.1	20706207
AT2G18290.1	PGSC0003DMT400060963	AT2G42260.1	20706207
AT2G18290.1	PGSC0003DMT400070712	AT3G04620.1	20706207
AT2G18290.1	PGSC0003DMT400063189	AT3G48150.1	20706207
AT2G18290.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT2G18290.1	PGSC0003DMT400046928	AT3G56150.1	20706207
AT2G18290.1	PGSC0003DMT400078176	AT3G56150.1	20706207
AT2G18290.1	PGSC0003DMT400060963	AT3G57860.1	20706207
AT2G18290.1	PGSC0003DMT400051207	AT4G19210.1	20706207
AT2G18290.1	PGSC0003DMT400037076	AT4G25550.1	20706207
AT2G18290.1	PGSC0003DMT400037077	AT4G25550.1	20706207
AT2G18290.1	PGSC0003DMT400084196	AT4G25550.1	20706207
AT2G18290.1	PGSC0003DMT400076326	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062680.2.1	Tomato	cytosol	98.95	98.95
VIT_04s0023g01940.t01	Wine grape	cytosol	85.86	85.42
KRH08242	Soybean	cytosol	85.34	84.9
KRH69898	Soybean	cytosol	85.34	84.9
GSMUA_Achr1P03050_001	Banana	cytosol	85.86	84.1
AT2G18290.1	Thale cress	nucleus	83.77	83.33
Bra024475.1-P	Field mustard	cytosol	83.25	82.81
CDY20922	Canola	cytosol	83.25	82.81
CDY29224	Canola	cytosol	83.25	82.81
Os05t0579800-01	Rice	cytosol	79.58	75.62
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	79.06	75.12
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	78.53	74.63
CDY25160	Canola	nucleus	56.02	74.31
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	74.87	72.22
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	77.49	64.91
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	29.84	53.27
KRG99106	Soybean	nucleus	29.32	45.9
TraesCS5A01G358300.1	Wheat	nucleus	29.32	37.09
TraesCS6A01G073800.1	Wheat	nucleus	29.32	37.09
TraesCS7A01G155100.1	Wheat	nucleus	29.32	37.09
TraesCS1D01G323600.1	Wheat	nucleus	28.8	36.42
TraesCS3B01G195200.1	Wheat	nucleus	27.75	35.1
KRH49548	Soybean	mitochondrion, plastid	27.23	29.21

Protein Annotations

EntrezGene:102589213	MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005680	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604	GO:GO:0019538	GO:GO:0031145
GO:GO:0032875	GO:GO:0032876	GO:GO:0051301	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979
UniProt:M1B964	PFAM:PF03256	EnsemblPlantsGene:PGSC0003DMG400015483	PGSC:PGSC0003DMG400015483	EnsemblPlants:PGSC0003DMT400040024	PIRSF:PIRSF028841
PFscan:PS51284	PANTHER:PTHR12936	SMART:SM01337	SUPFAM:SSF49785	UniParc:UPI000295A9B6	RefSeq:XP_006346953.1
SEG:seg	:	:	:	:	:

Description

Anaphase-promoting complex [Source:PGSC_GENE;Acc:PGSC0003DMG400015483]

Coordinates

chr2:-:20948520..20952606

Molecular Weight (calculated)

21425.4 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.424

Length

191 amino acids

Sequence
(BLAST)

001: MADSSEGEEE GKLTGGSQQL VVDDDLREMG KTAAWSVSSY KPGNGVLSLR DDNLETYWQS DGAQPHLVNV QFQKKVKLQL VVLYVDFKLD ESYTPGKISI
101: RAGDGFHNLK EIKAVELVKP TGWMHISLSG NDPRETFVNT FMLQIAVLSN HLNGRDTHIR QIKVYGPRPN PIPLQPFQFT STEFITYSAV R

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.