CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94435
EER95202
EER95217
EES02145
EES02737
EES04403
EES05908
EES07517
EES13928
EES17034
KXG20781
KXG21309
KXG30050
KXG30734
KXG33895
KXG34154
KXG35906
KXG40336
OQU76519
OQU80353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	EES02737	AT1G06590.1	20706207
AT2G18290.1	EER94435	AT1G32310.1	20706207
AT2G18290.1	KXG30734	AT1G32310.1	20706207
AT2G18290.1	KXG34154	AT1G32310.1	20706207
AT2G18290.1	OQU76519	AT1G32310.1	20706207
AT2G18290.1	OQU80353	AT1G32310.1	20706207
AT2G18290.1	EER95202	AT1G78770.1	20706207
AT2G18290.1	KXG20781	AT2G04660.1	20706207
AT2G18290.1	KXG33895	AT2G20000.1	17944809
AT2G18290.1	KXG33895	AT2G20000.1	20706207
AT2G18290.1	KXG21309	AT2G39090.1	20706207
AT2G18290.1	EES17034	AT3G04620.1	20706207
AT2G18290.1	KXG33895	AT3G16320.1	17944809
AT2G18290.1	KXG33895	AT3G16320.1	20706207
AT2G18290.1	EES07517	AT3G48150.1	20706207
AT2G18290.1	EES04403	AT3G48750.1	20706207
AT2G18290.1	KXG40336	AT3G48750.1	20706207
AT2G18290.1	EES13928	AT3G56150.1	20706207
AT2G18290.1	KXG35906	AT3G56150.1	20706207
AT2G18290.1	EER95217	AT4G19210.1	20706207
AT2G18290.1	KXG30050	AT4G19210.1	20706207
AT2G18290.1	EES05908	AT4G21530.1	20706207
AT2G18290.1	EES02145	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	96.52	96.52
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	92.04	93.43
TraesCS1D01G427200.2	Wheat	cytosol	88.06	90.77
Os05t0579800-01	Rice	cytosol	90.55	90.55
TraesCS1B01G449500.1	Wheat	cytoskeleton, cytosol, nucleus	90.05	89.6
TraesCS1A01G419400.1	Wheat	cytosol	86.57	89.23
GSMUA_Achr1P03050_001	Banana	cytosol	83.08	85.64
TraesCS6D01G354500.1	Wheat	cytosol	84.58	83.33
TraesCS6B01G407600.1	Wheat	cytosol	83.58	82.35
VIT_04s0023g01940.t01	Wine grape	cytosol	76.12	79.69
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	90.05	79.39
PGSC0003DMT400040024	Potato	cytosol	75.12	79.06
KRH69898	Soybean	cytosol	75.12	78.65
CDY29224	Canola	cytosol	74.63	78.12
CDY20922	Canola	cytosol	74.63	78.12
Solyc02g062680.2.1	Tomato	cytosol	74.13	78.01
KRH08242	Soybean	cytosol	74.13	77.6
Bra024475.1-P	Field mustard	cytosol	74.13	77.6
AT2G18290.1	Thale cress	nucleus	73.13	76.56
CDY25160	Canola	nucleus	50.75	70.83
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	37.31	70.09
KRG99106	Soybean	nucleus	28.86	47.54
KRH49548	Soybean	mitochondrion, plastid	26.87	30.34

Protein Annotations

MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	EntrezGene:8061096	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom	UniProt:C5YUX5
EnsemblPlants:EES19889	ProteinID:EES19889	ProteinID:EES19889.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005680	GO:GO:0006139
GO:GO:0006259	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604	GO:GO:0016740
GO:GO:0019538	GO:GO:0031145	GO:GO:0032875	GO:GO:0032876	GO:GO:0051301	GO:GO:0061630
GO:GO:0070979	GO:GO:1904668	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979	PFAM:PF03256
PIRSF:PIRSF028841	PFscan:PS51284	PANTHER:PTHR12936	SMART:SM01337	EnsemblPlantsGene:SORBI_3009G217300	SUPFAM:SSF49785
UniParc:UPI0001A891DF	RefSeq:XP_002441459.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:56167131..56169544

Molecular Weight (calculated)

22089.2 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.323

Length

201 amino acids

Sequence
(BLAST)

001: MESDAEEEAA ATPAAAGAPG AGRLKGSPEL TVDADMREMA KTAAWSVSSC KAGNGVAALR DDNLDTYWQS DGAQPHLVNI QFQKKVQLQL VALYVDFKLD
101: ESYTPSKISI RAGDGFHNLK EIKTVELAKP VGWVHISLSG ADPRETFIHT FMLQIAVLSN HLNGRDTHVR QIKIYGPRPN PVPAQPFHFT SREFITYSTI
201: R

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.