CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489300-01	Rice	plasma membrane	72.63	81.66
HORVU3Hr1G095800.1	Barley	nucleus	72.63	73.02
TraesCS3B01G473200.1	Wheat	nucleus	72.11	72.49
TraesCS3A01G439300.1	Wheat	nucleus	72.11	72.49
TraesCS3D01G432100.1	Wheat	nucleus	71.58	71.96
Zm00001d023639_P002	Maize	cytosol	74.21	69.12
GSMUA_Achr4P13630_001	Banana	cytosol	47.37	67.16
GSMUA_Achr4P06650_001	Banana	cytosol	49.47	63.51
KRG92697	Soybean	plastid	42.11	60.61
KRH34103	Soybean	plastid	42.11	60.61
EER88613	Sorghum	cytosol, nucleus, plastid	38.42	56.59
KRG96999	Soybean	nucleus	38.42	56.59
Bra036129.1-P	Field mustard	plastid	34.74	54.55
CDY00026	Canola	cytosol, nucleus, plastid	35.26	54.47
EES06481	Sorghum	cytosol, nucleus, plastid	40.0	53.9
KRH68751	Soybean	plastid	37.89	52.17
CDY57017	Canola	cytosol, nucleus, plastid	33.68	52.03
PGSC0003DMT400070712	Potato	plastid	43.68	51.23
EES00222	Sorghum	cytosol, nucleus, plastid	37.89	48.98
EES19123	Sorghum	nucleus	34.21	48.51
CDY40664	Canola	cytosol	41.05	48.45
Bra010003.1-P	Field mustard	cytosol	39.47	48.39
CDX86203	Canola	cytosol	39.47	48.39
CDY50744	Canola	cytosol	38.42	48.03
CDY41887	Canola	cytosol	38.42	48.03
Bra040393.1-P	Field mustard	cytosol	38.42	48.03
VIT_05s0020g04890.t01	Wine grape	cytosol	36.32	47.92
Solyc01g097050.2.1	Tomato	unclear	41.05	47.27
Bra001110.1-P	Field mustard	cytosol	40.0	46.34
AT3G04620.1	Thale cress	cytosol	40.0	46.34
CDX74179	Canola	cytosol	40.0	46.34
CDY21118	Canola	cytosol	36.84	44.87
CDY30010	Canola	cytosol	36.32	43.4
KRH77811	Soybean	cytosol	28.95	41.67
CDY28657	Canola	mitochondrion	29.47	28.14
CDX79500	Canola	cytosol	25.79	27.68
CDY68615	Canola	nucleus, plastid	28.95	25.7
CDY53532	Canola	nucleus	31.05	25.0

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EntrezGene:8063276	InterPro:Alba-like_dom_sf	UniProt:C5YNS6	ncoils:Coil
InterPro:DNA/RNA-bd_Alba-like	EnsemblPlants:EES17034	ProteinID:EES17034	ProteinID:EES17034.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	InterPro:IPR036882	PFAM:PF01918	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	EnsemblPlantsGene:SORBI_3008G099000
SUPFAM:SSF82704	UniParc:UPI0001A883F7	RefSeq:XP_002443196.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:46970489..46972066

Molecular Weight (calculated)

20728.3 Da

IEP (calculated)

4.545

GRAVY (calculated)

-0.615

Length

190 amino acids

Sequence
(BLAST)

001: MQAVRPAAEG EEAQAQEQAV REEVAEVKRE VAKAHEEEAA PEEKDVAVVG EEADAEAEAE AETEGEAEAE AEAGASAKKN RIQVSTNKKP LYFYVNLAKR
101: YMQNYDEVEL SALGMAIGTV VTVAEILKNN GLATEKKILT STIGTKDESK GRLVRKAKIE ILLCKSENFN SIMSSKKSDR PKSAEEEIKV

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.