CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001110.1-P	Field mustard	cytosol	100.0	100.0
CDY40664	Canola	cytosol	89.02	90.68
CDY41887	Canola	cytosol	83.54	90.13
CDY50744	Canola	cytosol	82.93	89.47
CDY21118	Canola	cytosol	81.1	85.26
AT3G04620.1	Thale cress	cytosol	84.15	84.15
CDY30010	Canola	cytosol	79.88	82.39
CDY57017	Canola	cytosol, nucleus, plastid	54.27	72.36
CDY00026	Canola	cytosol, nucleus, plastid	54.27	72.36
KRH34103	Soybean	plastid	57.93	71.97
KRG92697	Soybean	plastid	57.93	71.97
CDX86203	Canola	cytosol	66.46	70.32
CDY63142	Canola	nucleus	51.83	65.38
CDY17226	Canola	nucleus	51.83	65.38
CDY50785	Canola	cytosol, nucleus, plastid	50.61	63.85
CDY43326	Canola	cytosol, nucleus, plastid	50.0	63.08
CDX90176	Canola	nucleus	50.0	63.08
KRH68751	Soybean	plastid	52.44	62.32
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	49.39	62.31
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	49.39	62.31
CDX99800	Canola	cytosol, nucleus, plastid	49.39	62.31
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	49.39	62.31
KRG96999	Soybean	nucleus	46.95	59.69
GSMUA_Achr4P13630_001	Banana	cytosol	48.17	58.96
PGSC0003DMT400070712	Potato	plastid	56.71	57.41
Solyc01g097050.2.1	Tomato	unclear	57.32	56.97
GSMUA_Achr4P06650_001	Banana	cytosol	51.22	56.76
CDX79500	Canola	cytosol	52.44	48.59
CDY28657	Canola	mitochondrion	57.32	47.24
Os12t0489300-01	Rice	plasma membrane	47.56	46.15
CDY68615	Canola	nucleus, plastid	55.49	42.52
TraesCS3A01G439300.1	Wheat	nucleus	48.78	42.33
TraesCS3B01G473200.1	Wheat	nucleus	48.78	42.33
HORVU3Hr1G095800.1	Barley	nucleus	48.78	42.33
TraesCS3D01G432100.1	Wheat	nucleus	48.17	41.8
EES17034	Sorghum	nucleus	46.34	40.0
Zm00001d023639_P002	Maize	cytosol	46.34	37.25
CDY53532	Canola	nucleus	46.95	32.63

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	GO:A0A078CDC5	InterPro:Alba-like_dom_sf	EnsemblPlants:CDX74179	ProteinID:CDX74179
ProteinID:CDX74179.1	ncoils:Coil	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00111941001	InterPro:IPR036882	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5
SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI000254095A	SEG:seg	:	:

Description

BnaA03g28680D

Coordinates

chrLK031800:+:1668834..1670074

Molecular Weight (calculated)

17647.4 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.210

Length

164 amino acids

Sequence
(BLAST)

001: MAMEVATPAP APLTAPERNI VLVPSSVKAT AESHKKNRIQ VSNTKKPLFF YVNLAKRYMQ QHNEVELSAL GMAITTVVTI SEILKNNGLA IEKKVLTSTV
101: GMKDETKGRM VQKAKASIEI VLGKSDKFDS LVPPVTNGKT PEEVAKAETD AAIEAQEEAA ATEA

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.