Factsheet for Zm00001d023639_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489300-01	Rice	plasma membrane	64.71	78.11
EES17034	Sorghum	nucleus	69.12	74.21
GSMUA_Achr4P13630_001	Banana	cytosol	44.12	67.16
HORVU3Hr1G095800.1	Barley	nucleus	61.76	66.67
TraesCS3B01G473200.1	Wheat	nucleus	61.27	66.14
TraesCS3A01G439300.1	Wheat	nucleus	61.27	66.14
TraesCS3D01G432100.1	Wheat	nucleus	60.78	65.61
GSMUA_Achr4P06650_001	Banana	cytosol	45.59	62.84
KRH34103	Soybean	plastid	38.24	59.09
KRG92697	Soybean	plastid	38.24	59.09
KRG96999	Soybean	nucleus	34.8	55.04
Bra036129.1-P	Field mustard	plastid	31.86	53.72
CDY00026	Canola	cytosol, nucleus, plastid	32.35	53.66
Zm00001d053625_P001	Maize	extracellular, plasma membrane	36.27	53.24
KRH68751	Soybean	plastid	35.29	52.17
CDY57017	Canola	cytosol, nucleus, plastid	31.37	52.03
PGSC0003DMT400070712	Potato	plastid	40.2	50.62
CDX86203	Canola	cytosol	36.76	48.39
Bra010003.1-P	Field mustard	cytosol	36.76	48.39
Bra040393.1-P	Field mustard	cytosol	35.78	48.03
CDY41887	Canola	cytosol	35.78	48.03
CDY50744	Canola	cytosol	35.78	48.03
Solyc01g097050.2.1	Tomato	unclear	38.24	47.27
VIT_05s0020g04890.t01	Wine grape	cytosol	33.33	47.22
CDY40664	Canola	cytosol	37.25	47.2
Bra001110.1-P	Field mustard	cytosol	37.25	46.34
CDX74179	Canola	cytosol	37.25	46.34
AT3G04620.1	Thale cress	cytosol	36.76	45.73
CDY21118	Canola	cytosol	34.31	44.87
CDY30010	Canola	cytosol	33.82	43.4
KRH77811	Soybean	cytosol	25.98	40.15
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	18.14	37.0
Zm00001d009798_P001	Maize	cytosol	30.88	34.24
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	30.88	31.66
CDY28657	Canola	mitochondrion	27.94	28.64
CDX79500	Canola	cytosol	24.51	28.25
CDY68615	Canola	nucleus, plastid	26.96	25.7
CDY53532	Canola	nucleus	28.92	25.0
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	25.49	21.58

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	UniProt:A0A1D6IUH8	ProteinID:AQK39689.1	InterPro:Alba-like_dom_sf	ncoils:Coil
InterPro:DNA/RNA-bd_Alba-like	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0030154	GO:GO:0048235	InterPro:IPR036882	PFAM:PF01918
PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	UniParc:UPI0008428798	EnsemblPlantsGene:Zm00001d023639	EnsemblPlants:Zm00001d023639_P002
EnsemblPlants:Zm00001d023639_T002	SEG:seg	:	:	:	:

Description

Alba DNA/RNA-binding protein

Coordinates

chr10:+:13313330..13314792

Molecular Weight (calculated)

22435.4 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.551

Length

204 amino acids

Sequence
(BLAST)

001: MQAMRPAAEG EAQEQAVRAE ADEVKREVAK AHEEEEAVPE EKDVAVVGEE AEAEAETETE GEAEAEVEVE AEVEVEAEAG ASSAKKNRIQ VSTNKKPLYF
101: YVNLAKRYMQ NYDEVELSAL GMAIGTVVTV AEILKNNGLA TEKKILTSTI GTKDEAKGRL VRKAKCVFNF QIEILLCKSE NFNSIMSSKK SERPKPPAEE
201: EIKV

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.