CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34103	Soybean	plastid	85.61	85.61
KRH68751	Soybean	plastid	68.18	65.22
KRG96999	Soybean	nucleus	63.64	65.12
Bra036129.1-P	Field mustard	plastid	59.09	64.46
CDY57017	Canola	cytosol, nucleus, plastid	59.85	64.23
CDY00026	Canola	cytosol, nucleus, plastid	59.09	63.41
KRH09747	Soybean	cytosol, nucleus, plasma membrane	62.12	62.6
KRH23562	Soybean	nucleus	62.88	62.41
GSMUA_Achr4P13630_001	Banana	cytosol	61.36	60.45
Bra040393.1-P	Field mustard	cytosol	68.18	59.21
CDY41887	Canola	cytosol	68.18	59.21
CDY50744	Canola	cytosol	68.18	59.21
CDY40664	Canola	cytosol	71.21	58.39
Bra010003.1-P	Field mustard	cytosol	68.18	58.06
CDX86203	Canola	cytosol	68.18	58.06
Bra001110.1-P	Field mustard	cytosol	71.97	57.93
CDX74179	Canola	cytosol	71.97	57.93
KRH44436	Soybean	nucleus	62.12	56.94
AT3G04620.1	Thale cress	cytosol	70.45	56.71
CDY21118	Canola	cytosol	66.67	56.41
CDY30010	Canola	cytosol	65.15	54.09
PGSC0003DMT400070712	Potato	plastid	65.91	53.7
Solyc01g097050.2.1	Tomato	unclear	66.67	53.33
GSMUA_Achr4P06650_001	Banana	cytosol	59.09	52.7
KRH47470	Soybean	nucleus	53.79	51.45
KRH77811	Soybean	cytosol	46.97	46.97
Os12t0489300-01	Rice	plasma membrane	59.85	46.75
TraesCS3A01G439300.1	Wheat	nucleus	62.88	43.92
HORVU3Hr1G095800.1	Barley	nucleus	62.88	43.92
TraesCS3B01G473200.1	Wheat	nucleus	62.12	43.39
TraesCS3D01G432100.1	Wheat	nucleus	62.12	43.39
EES17034	Sorghum	nucleus	60.61	42.11
Zm00001d023639_P002	Maize	cytosol	59.09	38.24
CDX79500	Canola	cytosol	45.45	33.9
CDY28657	Canola	mitochondrion	50.0	33.17
CDY68615	Canola	nucleus, plastid	46.97	28.97
CDY53532	Canola	nucleus	46.21	25.85

Protein Annotations

EMBL:ACUP02012766	EnsemblPlants:KRG92697	EnsemblPlantsGene:GLYMA_20G226100	EntrezGene:100816274	Gene3D:3.30.110.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	InterPro:IPR036882	InterPro:UCP030333_Alba
PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	PFAM:PF01918	PIRSF:PIRSF030333	ProteinID:KRG92697	ProteinID:KRG92697.1
SEG:seg	SUPFAM:SSF82704	UniParc:UPI000233DD46	UniProt:I1NIR8	MapMan:15.3.7.2.1	:

Description

hypothetical protein

Coordinates

chr20:+:46013685..46015554

Molecular Weight (calculated)

14399.3 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.365

Length

132 amino acids

Sequence
(BLAST)

001: MATVAAAPAL TANDSHKKYR IQVSNTKKPL FFYVNLAKRY IQQHDEVELS ALGMAIATVV TISEILKNNG LATEKKVLTS TVGMKDENKG RLVQKAKIEI
101: VLGKSDKFDN LMSPPAPTES EAAAADDDHD KK

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.