Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41887 | Canola | cytosol | 50.85 | 59.21 |
| CDY50744 | Canola | cytosol | 50.28 | 58.55 |
| CDY21118 | Canola | cytosol | 50.85 | 57.69 |
| CDY30010 | Canola | cytosol | 50.28 | 55.97 |
| AT3G04620.1 | Thale cress | cytosol | 51.41 | 55.49 |
| CDY28657 | Canola | mitochondrion | 60.45 | 53.77 |
| CDX74179 | Canola | cytosol | 48.59 | 52.44 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 35.59 | 51.22 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 35.59 | 51.22 |
| CDY68615 | Canola | nucleus, plastid | 61.02 | 50.47 |
| CDX86203 | Canola | cytosol | 43.5 | 49.68 |
| CDY40664 | Canola | cytosol | 42.94 | 47.2 |
| KRH34103 | Soybean | plastid | 33.9 | 45.45 |
| KRG92697 | Soybean | plastid | 33.9 | 45.45 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 28.25 | 38.46 |
| CDY63142 | Canola | nucleus | 28.25 | 38.46 |
| CDY17226 | Canola | nucleus | 28.25 | 38.46 |
| KRG96999 | Soybean | nucleus | 27.68 | 37.98 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 27.68 | 37.69 |
| CDX90176 | Canola | nucleus | 27.68 | 37.69 |
| KRH68751 | Soybean | plastid | 29.38 | 37.68 |
| PGSC0003DMT400070712 | Potato | plastid | 34.46 | 37.65 |
| Solyc01g097050.2.1 | Tomato | unclear | 34.46 | 36.97 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.55 | 36.15 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.55 | 36.15 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 26.55 | 36.15 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.55 | 36.15 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 25.42 | 33.58 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 27.68 | 33.11 |
| Os12t0489300-01 | Rice | plasma membrane | 29.38 | 30.77 |
| CDY53532 | Canola | nucleus | 40.68 | 30.51 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 28.25 | 26.45 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 28.25 | 26.45 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 28.25 | 26.45 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 27.68 | 25.93 |
| EES17034 | Sorghum | nucleus | 27.68 | 25.79 |
| Zm00001d023639_P002 | Maize | cytosol | 28.25 | 24.51 |
Protein Annotations
| EnsemblPlants:CDX79500 | EnsemblPlantsGene:GSBRNA2T00132247001 | Gene3D:3.30.110.20 | GO:A0A078CRP9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF5 |
| PIRSF:PIRSF030333 | ProteinID:CDX79500 | ProteinID:CDX79500.1 | SEG:seg | UniParc:UPI0004EE44E3 | MapMan:15.3.7.2.1 |
Description
BnaC03g18360D
Coordinates
chrLK031818:-:405451..406856
Molecular Weight (calculated)
19812.3 Da
IEP (calculated)
7.351
GRAVY (calculated)
-0.259
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQFPSSTKT IRRLLPIQWP QPHNEEICLA MEEAEFEEKK EMAMEIATPA PAPITSPEIN ITLSPAKTET HKKNMIQVSN TKKPLFFDVN LAKREIGLVD
101: LVLIPERSLA FICPPKCLFV FQIEQFEKNT GLTTDKKVLT STVGMKDEAK GKMIEIVLGK SDKFDSLVPP VTNGKTP
101: LVLIPERSLA FICPPKCLFV FQIEQFEKNT GLTTDKKVLT STVGMKDEAK GKMIEIVLGK SDKFDSLVPP VTNGKTP
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.