Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 99.23 | 99.23 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 98.46 | 98.46 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 94.62 | 94.62 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 93.85 | 93.85 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 93.85 | 93.85 |
| CDX90176 | Canola | nucleus | 90.77 | 90.77 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 89.23 | 89.23 |
| CDY63142 | Canola | nucleus | 87.69 | 87.69 |
| CDY17226 | Canola | nucleus | 86.92 | 86.92 |
| EER88613 | Sorghum | cytosol, nucleus, plastid | 77.69 | 78.29 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 77.69 | 77.69 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 76.15 | 76.74 |
| KRH23562 | Soybean | nucleus | 78.46 | 76.69 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 75.38 | 75.97 |
| Os06t0602600-01 | Rice | nucleus | 76.92 | 75.76 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 76.15 | 75.57 |
| Os02t0202500-01 | Rice | nucleus | 40.0 | 75.36 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 73.08 | 73.64 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 71.54 | 73.23 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 73.85 | 72.73 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 73.08 | 71.97 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 73.08 | 71.97 |
| PGSC0003DMT400052773 | Potato | cytosol | 70.77 | 71.88 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 72.31 | 71.76 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 72.31 | 71.21 |
| Solyc06g066100.2.1 | Tomato | nucleus | 70.0 | 71.09 |
| PGSC0003DMT400052712 | Potato | cytosol | 70.0 | 71.09 |
| Solyc06g065980.2.1 | Tomato | nucleus | 69.23 | 70.31 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 76.15 | 70.21 |
| PGSC0003DMT400073472 | Potato | cytosol | 68.46 | 70.08 |
| Solyc06g068050.2.1 | Tomato | nucleus | 67.69 | 69.29 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 73.85 | 69.06 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 73.85 | 69.06 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 73.85 | 69.06 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 73.85 | 69.06 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 66.92 | 67.97 |
| KRH44436 | Soybean | nucleus | 74.62 | 67.36 |
| Os01t0173100-01 | Rice | nucleus | 76.92 | 65.79 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 67.69 | 65.67 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 73.08 | 64.63 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 64.62 | 63.16 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 65.38 | 62.96 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 64.62 | 62.69 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 70.77 | 62.59 |
| KRH47470 | Soybean | nucleus | 64.62 | 60.87 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 70.0 | 59.48 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 70.77 | 59.35 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 70.77 | 59.35 |
| EES19123 | Sorghum | nucleus | 59.23 | 57.46 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 73.08 | 56.55 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 52.31 | 55.28 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 50.0 | 52.85 |
| CDY41887 | Canola | cytosol | 59.23 | 50.66 |
| CDY50744 | Canola | cytosol | 58.46 | 50.0 |
| CDY40664 | Canola | cytosol | 61.54 | 49.69 |
| CDX74179 | Canola | cytosol | 62.31 | 49.39 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 61.54 | 48.48 |
| CDY21118 | Canola | cytosol | 57.69 | 48.08 |
| CDY30010 | Canola | cytosol | 56.92 | 46.54 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 35.38 | 46.0 |
| CDX86203 | Canola | cytosol | 54.62 | 45.81 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 38.46 | 43.86 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 63.08 | 41.21 |
| Zm00001d009798_P001 | Maize | cytosol | 54.62 | 38.59 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 50.77 | 27.39 |
| CDY28657 | Canola | mitochondrion | 40.77 | 26.63 |
| CDX79500 | Canola | cytosol | 36.15 | 26.55 |
| CDY68615 | Canola | nucleus, plastid | 39.23 | 23.83 |
| CDY53532 | Canola | nucleus | 38.46 | 21.19 |
Protein Annotations
| EnsemblPlants:CDX94654 | EnsemblPlantsGene:GSBRNA2T00157986001 | Gene3D:3.30.110.20 | GO:A0A078E215 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | ncoils:Coil |
| PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 | PFAM:PF01918 | PIRSF:PIRSF030333 | ProteinID:CDX94654 | ProteinID:CDX94654.1 |
| SEG:seg | SUPFAM:SSF82704 | UniParc:UPI0004EB7747 | MapMan:15.3.7.2.1 | : | : |
Description
BnaC07g10040D
Coordinates
chrLK031883:+:788762..790160
Molecular Weight (calculated)
14389.3 Da
IEP (calculated)
5.967
GRAVY (calculated)
-0.362
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGITEGVNS MSLGVDTQKK SRIQVSHTKK PLFFYVNLAK RYMQQYSDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQS
101: EITLAKSEKF DELMAAANEE KEAAEAQEQS
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.