Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g066100.2.1 | Tomato | nucleus | 99.22 | 99.22 |
| PGSC0003DMT400052773 | Potato | cytosol | 98.44 | 98.44 |
| AT2G34160.1 | Thale cress | cytosol | 71.09 | 70.0 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 71.09 | 70.0 |
| Solyc06g068050.2.1 | Tomato | nucleus | 68.75 | 69.29 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 70.31 | 69.23 |
| CDX90176 | Canola | nucleus | 70.31 | 69.23 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.31 | 69.23 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.31 | 69.23 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.31 | 69.23 |
| CDY17226 | Canola | nucleus | 70.31 | 69.23 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 70.31 | 69.23 |
| CDY63142 | Canola | nucleus | 70.31 | 69.23 |
| Bra010843.1-P | Field mustard | nucleus | 70.31 | 69.23 |
| Bra005449.1-P | Field mustard | nucleus | 70.31 | 69.23 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 70.31 | 69.23 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 69.53 | 68.46 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 69.53 | 68.46 |
| Solyc01g097050.2.1 | Tomato | unclear | 60.94 | 47.27 |
Protein Annotations
| EnsemblPlants:Solyc06g065980.2.1 | EnsemblPlantsGene:Solyc06g065980.2 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SUPFAM:SSF82704 | UniParc:UPI0002765B94 | UniProt:K4C7M6 | MapMan:15.3.7.2.1 |
Description
No Description!
Coordinates
chr6:+:41355955..41359241
Molecular Weight (calculated)
14416.3 Da
IEP (calculated)
5.319
GRAVY (calculated)
-0.548
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGITDGVNK MSVSETQKKN RIQVSNTKKS LFFYVNLSKR YMQQYNEVEL SALGMAISTV VTIAEILKNN GFAVEKKIRT LTVDMRDEPG ARPIPKAKIE
101: IVLGKTEKFD ELMAAEAEQN GDNEEQQN
101: IVLGKTEKFD ELMAAEAEQN GDNEEQQN
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.