CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005449.1-P	Field mustard	nucleus	100.0	100.0
CDY17226	Canola	nucleus	99.23	99.23
AT2G34160.1	Thale cress	cytosol	91.54	91.54
CDX90176	Canola	nucleus	90.0	90.0
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	88.46	88.46
CDY43326	Canola	cytosol, nucleus, plastid	88.46	88.46
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	87.69	87.69
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	87.69	87.69
CDY50785	Canola	cytosol, nucleus, plastid	87.69	87.69
CDX99800	Canola	cytosol, nucleus, plastid	85.38	85.38
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	80.77	81.4
VIT_11s0016g05100.t01	Wine grape	nucleus	80.77	80.77
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	79.23	79.84
EER88613	Sorghum	cytosol, nucleus, plastid	77.69	78.29
GSMUA_Achr6P00670_001	Banana	nucleus	76.15	77.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	76.15	76.74
KRH23562	Soybean	nucleus	78.46	76.69
KRH09747	Soybean	cytosol, nucleus, plasma membrane	76.92	76.34
Os06t0602600-01	Rice	nucleus	76.92	75.76
TraesCS7A01G374500.1	Wheat	nucleus	76.15	75.0
GSMUA_Achr7P08310_001	Banana	cytosol	75.38	74.24
TraesCS7D01G348900.1	Wheat	cytosol, nucleus, plastid	75.38	74.24
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	74.62	74.05
TraesCS7B01G252900.1	Wheat	cytosol	74.62	73.48
Os02t0202500-01	Rice	nucleus	38.46	72.46
Zm00001d053625_P001	Maize	extracellular, plasma membrane	76.92	71.94
PGSC0003DMT400073472	Potato	cytosol	70.0	71.65
EES06481	Sorghum	cytosol, nucleus, plastid	77.69	71.63
Solyc06g068050.2.1	Tomato	nucleus	69.23	70.87
TraesCS6D01G168100.1	Wheat	cytosol, nucleus, plastid	75.38	70.5
TraesCS6B01G209900.1	Wheat	cytosol, nucleus, plastid	75.38	70.5
Solyc06g065980.2.1	Tomato	nucleus	69.23	70.31
TraesCS6A01G175200.1	Wheat	cytosol, nucleus, plastid	74.62	69.78
Solyc06g066100.2.1	Tomato	nucleus	68.46	69.53
PGSC0003DMT400052773	Potato	cytosol	68.46	69.53
PGSC0003DMT400052712	Potato	cytosol	68.46	69.53
KRH44436	Soybean	nucleus	76.15	68.75
GSMUA_Achr7P09990_001	Banana	cytosol	67.69	68.75
VIT_04s0023g02330.t01	Wine grape	cytosol	77.69	68.71
GSMUA_Achr6P05270_001	Banana	cytosol	69.23	67.16
EES00222	Sorghum	cytosol, nucleus, plastid	73.08	64.63
Os01t0173100-01	Rice	nucleus	75.38	64.47
KRH47470	Soybean	nucleus	66.15	62.32
TraesCS1B01G135500.1	Wheat	cytosol, nucleus, plastid	62.31	60.9
TraesCS1A01G115600.1	Wheat	cytosol, nucleus, plastid	63.08	60.74
TraesCS1D01G117000.1	Wheat	cytosol	62.31	60.45
TraesCS3B01G148300.1	Wheat	cytosol, nucleus, plastid	69.23	58.82
HORVU7Hr1G084100.1	Barley	mitochondrion	75.38	58.33
TraesCS3A01G129200.1	Wheat	cytosol, nucleus, plastid	69.23	58.06
TraesCS3D01G130100.1	Wheat	cytosol, nucleus, plastid	69.23	58.06
EES19123	Sorghum	nucleus	59.23	57.46
CDY00026	Canola	cytosol, nucleus, plastid	53.85	56.91
CDY57017	Canola	cytosol, nucleus, plastid	51.54	54.47
CDY41887	Canola	cytosol	62.31	53.29
CDY40664	Canola	cytosol	65.38	52.8
CDY50744	Canola	cytosol	61.54	52.63
CDX74179	Canola	cytosol	65.38	51.83
CDY21118	Canola	cytosol	60.77	50.64
CDY30010	Canola	cytosol	60.0	49.06
CDX86203	Canola	cytosol	58.46	49.03
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	37.69	49.0
HORVU1Hr1G025500.1	Barley	cytosol, nucleus, plastid	59.23	46.67
GSMUA_Achr7P10060_001	Banana	extracellular	37.69	42.98
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	63.08	41.21
Zm00001d009798_P001	Maize	cytosol	54.62	38.59
CDX79500	Canola	cytosol	38.46	28.25
CDY28657	Canola	mitochondrion	43.08	28.14
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	51.54	27.8
CDY68615	Canola	nucleus, plastid	41.54	25.23
CDY53532	Canola	nucleus	39.23	21.61

Protein Annotations

EnsemblPlants:CDY63142	EnsemblPlantsGene:GSBRNA2T00037956001	Gene3D:3.30.110.20	GO:A0A078J8F3	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	InterPro:IPR036882	InterPro:UCP030333_Alba	ncoils:Coil
PANTHER:PTHR31947	PANTHER:PTHR31947:SF11	PFAM:PF01918	PIRSF:PIRSF030333	ProteinID:CDY63142	ProteinID:CDY63142.1
SEG:seg	SUPFAM:SSF82704	UniParc:UPI0002548107	UniProt:A0A078J8F3	MapMan:15.3.7.2.1	:

Description

BnaCnng41440DBnaCnng41440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8F3]

Coordinates

chrLK034250:-:15162..16336

Molecular Weight (calculated)

14445.4 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.427

Length

130 amino acids

Sequence
(BLAST)

001: MEEITDGVNN MNLAVDSQKK NRIQVSNTKK PLFFYVNLAK RYMQEHNDVE LSALGMAIAT VVTIAEILKN NGFAVEKKIM TSTVDIKDGS RGRPVQKPKI
101: EITLGKSEKF DELMAAANEE KEAAEAQVQS

Best Arabidopsis Sequence Match ( AT2G34160.1 )
(BLAST)

001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN

Arabidopsis Description

Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.