CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57017	Canola	cytosol, nucleus, plastid	95.12	95.12
Bra036129.1-P	Field mustard	plastid	78.86	80.17
CDX86203	Canola	cytosol	78.05	61.94
CDY21118	Canola	cytosol	75.61	59.62
KRH34103	Soybean	plastid	63.41	59.09
KRG92697	Soybean	plastid	63.41	59.09
CDY41887	Canola	cytosol	72.36	58.55
CDY50744	Canola	cytosol	71.54	57.89
CDY30010	Canola	cytosol	73.98	57.23
CDX74179	Canola	cytosol	72.36	54.27
CDY63142	Canola	nucleus	56.91	53.85
CDY17226	Canola	nucleus	56.91	53.85
CDY50785	Canola	cytosol, nucleus, plastid	56.1	53.08
KRG96999	Soybean	nucleus	55.28	52.71
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	55.28	52.31
CDY43326	Canola	cytosol, nucleus, plastid	54.47	51.54
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	54.47	51.54
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	54.47	51.54
CDX99800	Canola	cytosol, nucleus, plastid	54.47	51.54
CDX90176	Canola	nucleus	54.47	51.54
GSMUA_Achr4P13630_001	Banana	cytosol	56.1	51.49
KRH68751	Soybean	plastid	56.91	50.72
CDY40664	Canola	cytosol	65.85	50.31
GSMUA_Achr4P06650_001	Banana	cytosol	60.16	50.0
Solyc01g097050.2.1	Tomato	unclear	66.67	49.7
PGSC0003DMT400070712	Potato	plastid	60.98	46.3
Os12t0489300-01	Rice	plasma membrane	55.28	40.24
TraesCS3B01G473200.1	Wheat	nucleus	57.72	37.57
TraesCS3A01G439300.1	Wheat	nucleus	57.72	37.57
HORVU3Hr1G095800.1	Barley	nucleus	57.72	37.57
TraesCS3D01G432100.1	Wheat	nucleus	56.91	37.04
CDY28657	Canola	mitochondrion	57.72	35.68
CDX79500	Canola	cytosol	51.22	35.59
EES17034	Sorghum	nucleus	54.47	35.26
Zm00001d023639_P002	Maize	cytosol	53.66	32.35
CDY68615	Canola	nucleus, plastid	54.47	31.31
CDY53532	Canola	nucleus	45.53	23.73

Protein Annotations

EnsemblPlants:CDY00026	EnsemblPlantsGene:GSBRNA2T00109504001	Gene3D:3.30.110.20	GO:A0A078EG06	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	InterPro:IPR036882	InterPro:UCP030333_Alba	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	PFAM:PF01918	PIRSF:PIRSF030333	ProteinID:CDY00026	ProteinID:CDY00026.1	SUPFAM:SSF82704
UniParc:UPI0004EEC11D	MapMan:15.3.7.2.1	:	:	:	:

Description

BnaC09g02750D

Coordinates

chrLK031916:+:268567..269913

Molecular Weight (calculated)

13465.5 Da

IEP (calculated)

10.529

GRAVY (calculated)

0.038

Length

123 amino acids

Sequence
(BLAST)

001: MAMEIATPIH APVTSPASNL IISATTAVET QKKNRIQVSN TKKPLFFYVN LAKRYIQQHN EVELSALGMA ITTVVTISEI LKNNGLATEK KVLTSTVGIK
101: DESKGKIVQK TKASFSFFLQ LLS

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.