CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68751	Soybean	plastid	82.95	77.54
KRG92697	Soybean	plastid	65.12	63.64
KRH34103	Soybean	plastid	62.79	61.36
KRH23562	Soybean	nucleus	62.02	60.15
KRH09747	Soybean	cytosol, nucleus, plasma membrane	58.91	58.02
Bra036129.1-P	Field mustard	plastid	51.94	55.37
CDY00026	Canola	cytosol, nucleus, plastid	52.71	55.28
CDY57017	Canola	cytosol, nucleus, plastid	52.71	55.28
GSMUA_Achr4P13630_001	Banana	cytosol	57.36	55.22
KRH44436	Soybean	nucleus	58.91	52.78
GSMUA_Achr4P06650_001	Banana	cytosol	55.81	48.65
KRH47470	Soybean	nucleus	51.94	48.55
Bra010003.1-P	Field mustard	cytosol	57.36	47.74
CDX86203	Canola	cytosol	57.36	47.74
CDY50744	Canola	cytosol	55.81	47.37
CDY41887	Canola	cytosol	55.81	47.37
Bra040393.1-P	Field mustard	cytosol	55.81	47.37
CDY40664	Canola	cytosol	58.91	47.2
CDX74179	Canola	cytosol	59.69	46.95
Bra001110.1-P	Field mustard	cytosol	59.69	46.95
AT3G04620.1	Thale cress	cytosol	58.91	46.34
PGSC0003DMT400070712	Potato	plastid	57.36	45.68
CDY21118	Canola	cytosol	55.04	45.51
Solyc01g097050.2.1	Tomato	unclear	58.14	45.45
CDY30010	Canola	cytosol	55.04	44.65
Os12t0489300-01	Rice	plasma membrane	56.59	43.2
KRH77811	Soybean	cytosol	44.19	43.18
EES17034	Sorghum	nucleus	56.59	38.42
HORVU3Hr1G095800.1	Barley	nucleus	54.26	37.04
TraesCS3A01G439300.1	Wheat	nucleus	54.26	37.04
TraesCS3B01G473200.1	Wheat	nucleus	54.26	37.04
TraesCS3D01G432100.1	Wheat	nucleus	53.49	36.51
Zm00001d023639_P002	Maize	cytosol	55.04	34.8
CDX79500	Canola	cytosol	37.98	27.68
CDY28657	Canola	mitochondrion	41.86	27.14
CDY68615	Canola	nucleus, plastid	40.31	24.3
CDY53532	Canola	nucleus	41.09	22.46

Protein Annotations

EntrezGene:100305998	MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EMBL:ACUP02012171	InterPro:Alba-like_dom_sf	EMBL:BT089879
UniProt:C6SXI4	InterPro:DNA/RNA-bd_Alba-like	EnsemblPlantsGene:GLYMA_19G246100	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR036882	EnsemblPlants:KRG96999	ProteinID:KRG96999	ProteinID:KRG96999.1	PFAM:PF01918	PIRSF:PIRSF030333
PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI0001B1535D	:

Description

hypothetical protein

Coordinates

chr19:+:49284927..49286811

Molecular Weight (calculated)

14192.0 Da

IEP (calculated)

9.968

GRAVY (calculated)

-0.530

Length

129 amino acids

Sequence
(BLAST)

001: MLATVAASVP QNQNTNHEVE SPKKNKIQVS NTKKPLFFYV NLAKRYIQQR DEVVLSALGM GITTVVTIAE ILKNNGLATE KKISTSSVSL KDENKGRLVQ
101: KAKIEIVMEK TEKSTESEAA ATDDGNEKK

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.