CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28657	Canola	mitochondrion	70.56	75.88
CDY41887	Canola	cytosol	44.39	62.5
CDY50744	Canola	cytosol	43.93	61.84
CDX79500	Canola	cytosol	50.47	61.02
CDY21118	Canola	cytosol	43.46	59.62
CDY30010	Canola	cytosol	42.99	57.86
AT3G04620.1	Thale cress	cytosol	43.93	57.32
CDX74179	Canola	cytosol	42.52	55.49
CDY00026	Canola	cytosol, nucleus, plastid	31.31	54.47
CDY57017	Canola	cytosol, nucleus, plastid	31.31	54.47
CDX86203	Canola	cytosol	37.85	52.26
CDY40664	Canola	cytosol	37.85	50.31
KRG92697	Soybean	plastid	28.97	46.97
KRH34103	Soybean	plastid	28.5	46.21
CDY17226	Canola	nucleus	25.23	41.54
CDY63142	Canola	nucleus	25.23	41.54
CDY43326	Canola	cytosol, nucleus, plastid	25.23	41.54
CDY50785	Canola	cytosol, nucleus, plastid	24.77	40.77
CDX90176	Canola	nucleus	24.77	40.77
KRH68751	Soybean	plastid	26.17	40.58
KRG96999	Soybean	nucleus	24.3	40.31
PGSC0003DMT400070712	Potato	plastid	29.91	39.51
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	23.83	39.23
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	23.83	39.23
CDX99800	Canola	cytosol, nucleus, plastid	23.83	39.23
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	23.83	39.23
Solyc01g097050.2.1	Tomato	unclear	29.91	38.79
GSMUA_Achr4P13630_001	Banana	cytosol	23.83	38.06
GSMUA_Achr4P06650_001	Banana	cytosol	25.7	37.16
CDY53532	Canola	nucleus	36.92	33.47
Os12t0489300-01	Rice	plasma membrane	25.7	32.54
HORVU3Hr1G095800.1	Barley	nucleus	27.1	30.69
TraesCS3A01G439300.1	Wheat	nucleus	27.1	30.69
TraesCS3B01G473200.1	Wheat	nucleus	27.1	30.69
TraesCS3D01G432100.1	Wheat	nucleus	26.64	30.16
EES17034	Sorghum	nucleus	25.7	28.95
Zm00001d023639_P002	Maize	cytosol	25.7	26.96

Protein Annotations

EnsemblPlants:CDY68615	EnsemblPlantsGene:GSBRNA2T00076023001	Gene3D:3.30.110.20	GO:A0A078JQ83	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:IPR036882	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	ProteinID:CDY68615
ProteinID:CDY68615.1	SEG:seg	SUPFAM:SSF82704	UniParc:UPI0004EF10C8	UniProt:A0A078JQ83	MapMan:15.3.7.2.1

Description

BnaCnng59770DBnaCnng59770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ83]

Coordinates

chrLK037659:-:1416..3405

Molecular Weight (calculated)

23976.5 Da

IEP (calculated)

8.727

GRAVY (calculated)

-0.193

Length

214 amino acids

Sequence
(BLAST)

001: MIHHPRSTFN EVSSCKAVEI QVLKVLHPSS RNHPIVYRST LMSQFPSSTK TIRRLLPIQW PQPQSEEICL AMEEAEFEEK KMAMEIATPA PAPITSPEIN
101: IILSPAKTET HKKNMIQVSN TKNPLFFDVN LDKREIGLVD LVLIPERSLA FISIMMVVTI SEILKNTGLT RDKKELTSTV GMKDEAKGKM IEIVLGKSDK
201: FDSLVPPVTN GKTP

Best Arabidopsis Sequence Match ( AT5G63135.1 )
(BLAST)

1: MLQFPTLMTQ FPSSTKTIPA SYLLPLQWPQ PQNEEILLAM EEAEFEEKCN EIRKMSPALP VIGKPVVNNE QEEDDNEAED DDADNAEESD GEEFEQETG

Arabidopsis Description

At5g63135 [Source:UniProtKB/TrEMBL;Acc:Q8LC33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.