Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001110.1-P | Field mustard | cytosol | 90.68 | 89.02 |
| CDX74179 | Canola | cytosol | 90.68 | 89.02 |
| CDY50744 | Canola | cytosol | 78.26 | 82.89 |
| CDY41887 | Canola | cytosol | 78.26 | 82.89 |
| AT3G04620.1 | Thale cress | cytosol | 81.99 | 80.49 |
| CDY21118 | Canola | cytosol | 77.02 | 79.49 |
| CDY30010 | Canola | cytosol | 75.78 | 76.73 |
| KRH34103 | Soybean | plastid | 59.01 | 71.97 |
| KRG92697 | Soybean | plastid | 58.39 | 71.21 |
| CDX86203 | Canola | cytosol | 64.6 | 67.1 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 50.31 | 65.85 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 50.31 | 65.85 |
| CDY63142 | Canola | nucleus | 52.8 | 65.38 |
| CDY17226 | Canola | nucleus | 52.8 | 65.38 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 50.93 | 63.08 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 50.93 | 63.08 |
| CDX90176 | Canola | nucleus | 50.93 | 63.08 |
| KRH68751 | Soybean | plastid | 53.42 | 62.32 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 50.31 | 62.31 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.69 | 61.54 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.69 | 61.54 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.69 | 61.54 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 49.07 | 58.96 |
| KRG96999 | Soybean | nucleus | 47.2 | 58.91 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 52.8 | 57.43 |
| PGSC0003DMT400070712 | Potato | plastid | 57.76 | 57.41 |
| Solyc01g097050.2.1 | Tomato | unclear | 57.76 | 56.36 |
| Os12t0489300-01 | Rice | plasma membrane | 47.2 | 44.97 |
| CDX79500 | Canola | cytosol | 47.2 | 42.94 |
| CDY28657 | Canola | mitochondrion | 52.17 | 42.21 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 48.45 | 41.27 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 48.45 | 41.27 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 48.45 | 41.27 |
| EES17034 | Sorghum | nucleus | 48.45 | 41.05 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 47.83 | 40.74 |
| CDY68615 | Canola | nucleus, plastid | 50.31 | 37.85 |
| Zm00001d023639_P002 | Maize | cytosol | 47.2 | 37.25 |
| CDY53532 | Canola | nucleus | 45.34 | 30.93 |
Protein Annotations
| MapMan:15.3.7.2.1 | Gene3D:3.30.110.20 | GO:A0A078HTL7 | UniProt:A0A078HTL7 | InterPro:Alba-like_dom_sf | EnsemblPlants:CDY40664 |
| ProteinID:CDY40664 | ProteinID:CDY40664.1 | ncoils:Coil | InterPro:DNA/RNA-bd_Alba-like | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00071537001 | InterPro:IPR036882 | PFAM:PF01918 | PIRSF:PIRSF030333 | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF5 | SUPFAM:SSF82704 | InterPro:UCP030333_Alba | UniParc:UPI0004EE3CA6 | SEG:seg | : |
Description
BnaC03g33800DBnaC03g33800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTL7]
Coordinates
chrLK032477:-:26148..27116
Molecular Weight (calculated)
17289.9 Da
IEP (calculated)
8.899
GRAVY (calculated)
-0.240
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEVATPAP APEKNIVLAP PSVKATAESH KKNRIQVSNT KKPLFFYVNL AKRYMQQHNE VELSALGMAI TTVVTISEIL KNNGLAIEKK VLTSTVGMKD
101: ETKGRMVQKA KASIEIVLGK SDKFDSLVPP VTNGKTPEEV AKAETDAAIE AQEEAAAATE A
101: ETKGRMVQKA KASIEIVLGK SDKFDSLVPP VTNGKTPEEV AKAETDAAIE AQEEAAAATE A
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.