Factsheet for Solyc01g097050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070712	Potato	plastid	67.27	68.52
KRH34103	Soybean	plastid	53.94	67.42
KRG92697	Soybean	plastid	53.33	66.67
CDY00026	Canola	cytosol, nucleus, plastid	49.7	66.67
CDY57017	Canola	cytosol, nucleus, plastid	49.7	66.67
Bra036129.1-P	Field mustard	plastid	46.06	62.81
Bra010003.1-P	Field mustard	cytosol	57.58	61.29
CDX86203	Canola	cytosol	57.58	61.29
Solyc06g066100.2.1	Tomato	nucleus	47.27	60.94
Solyc06g065980.2.1	Tomato	nucleus	47.27	60.94
Bra040393.1-P	Field mustard	cytosol	55.15	59.87
CDY41887	Canola	cytosol	55.15	59.87
CDY50744	Canola	cytosol	55.15	59.87
KRH68751	Soybean	plastid	49.7	59.42
Solyc06g068050.2.1	Tomato	nucleus	44.85	58.27
KRG96999	Soybean	nucleus	45.45	58.14
CDY40664	Canola	cytosol	56.36	57.76
GSMUA_Achr4P13630_001	Banana	cytosol	46.67	57.46
Bra001110.1-P	Field mustard	cytosol	56.97	57.32
CDX74179	Canola	cytosol	56.97	57.32
CDY21118	Canola	cytosol	53.94	57.05
AT3G04620.1	Thale cress	cytosol	55.76	56.1
CDY30010	Canola	cytosol	52.73	54.72
GSMUA_Achr4P06650_001	Banana	cytosol	47.88	53.38
Os12t0489300-01	Rice	plasma membrane	47.27	46.15
TraesCS3B01G473200.1	Wheat	nucleus	47.27	41.27
EES17034	Sorghum	nucleus	47.27	41.05
HORVU3Hr1G095800.1	Barley	nucleus	46.67	40.74
TraesCS3A01G439300.1	Wheat	nucleus	46.67	40.74
TraesCS3D01G432100.1	Wheat	nucleus	46.06	40.21
Zm00001d023639_P002	Maize	cytosol	47.27	38.24
CDX79500	Canola	cytosol	36.97	34.46
CDY28657	Canola	mitochondrion	41.21	34.17
CDY68615	Canola	nucleus, plastid	38.79	29.91
CDY53532	Canola	nucleus	35.76	25.0

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	InterPro:IPR036882	UniProt:K4B093	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	EnsemblPlantsGene:Solyc01g097050.2	EnsemblPlants:Solyc01g097050.2.1	InterPro:UCP030333_Alba	UniParc:UPI0002767E37
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:88020144..88022726

Molecular Weight (calculated)

17895.5 Da

IEP (calculated)

10.350

GRAVY (calculated)

-0.493

Length

165 amino acids

Sequence
(BLAST)

001: MPIETMAPVA APTLATATPV STPASAPTNN NNEAQKKSNR IQVSNTKKPL FFYVNLAKRY MQQHNEVELS ALGMAITTVV TVAEILKNGG FATEKKVLTS
101: TVGMKDEAKG RMVQKARIEI VLTKSEKFDK LMTPSNTNSD HAVAQDGAAT NKNTITNDTK EQTKK

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.