CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30010	Canola	cytosol	98.08	96.23
CDY41887	Canola	cytosol	91.03	93.42
CDY50744	Canola	cytosol	90.38	92.76
AT3G04620.1	Thale cress	cytosol	86.54	82.32
CDX74179	Canola	cytosol	85.26	81.1
CDY40664	Canola	cytosol	79.49	77.02
CDY00026	Canola	cytosol, nucleus, plastid	59.62	75.61
CDY57017	Canola	cytosol, nucleus, plastid	58.97	74.8
CDX86203	Canola	cytosol	72.44	72.9
KRH34103	Soybean	plastid	56.41	66.67
KRG92697	Soybean	plastid	56.41	66.67
CDY17226	Canola	nucleus	50.64	60.77
CDY63142	Canola	nucleus	50.64	60.77
CDX90176	Canola	nucleus	48.72	58.46
CDY50785	Canola	cytosol, nucleus, plastid	48.72	58.46
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	48.08	57.69
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	48.08	57.69
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	48.08	57.69
CDY43326	Canola	cytosol, nucleus, plastid	48.08	57.69
CDX99800	Canola	cytosol, nucleus, plastid	47.44	56.92
KRH68751	Soybean	plastid	50.0	56.52
KRG96999	Soybean	nucleus	45.51	55.04
Solyc01g097050.2.1	Tomato	unclear	57.05	53.94
GSMUA_Achr4P13630_001	Banana	cytosol	46.15	53.73
GSMUA_Achr4P06650_001	Banana	cytosol	50.64	53.38
PGSC0003DMT400070712	Potato	plastid	54.49	52.47
CDX79500	Canola	cytosol	57.69	50.85
CDY28657	Canola	mitochondrion	62.18	48.74
CDY68615	Canola	nucleus, plastid	59.62	43.46
Os12t0489300-01	Rice	plasma membrane	46.79	43.2
TraesCS3A01G439300.1	Wheat	nucleus	48.72	40.21
TraesCS3B01G473200.1	Wheat	nucleus	48.72	40.21
HORVU3Hr1G095800.1	Barley	nucleus	48.08	39.68
TraesCS3D01G432100.1	Wheat	nucleus	48.08	39.68
EES17034	Sorghum	nucleus	44.87	36.84
Zm00001d023639_P002	Maize	cytosol	44.87	34.31
CDY53532	Canola	nucleus	49.36	32.63

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	GO:A0A078G8U1	UniProt:A0A078G8U1	InterPro:Alba-like_dom_sf	EnsemblPlants:CDY21118
ProteinID:CDY21118	ProteinID:CDY21118.1	ncoils:Coil	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00015298001	InterPro:IPR036882	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI0004EE4C6D	SEG:seg	:

Description

BnaA01g33490DBnaA01g33490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8U1]

Coordinates

chrLK032116:+:64809..65815

Molecular Weight (calculated)

16755.4 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.076

Length

156 amino acids

Sequence
(BLAST)

001: MAMEVATPAF APITSPEINI VLAATAKKAS VETHKKNRIQ VSNTKKPLFF YVNLAKRYIQ QHNEVELSAL GMAITTVVTI SEILKNNGLA TEKKVLTSTV
101: GMKDETKGKM IEIVLGKSAK FDSLVPPVTN GKTPEEVAKA ETEAAVEVQE AAATEA

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.