CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21118	Canola	cytosol	96.23	98.08
CDY41887	Canola	cytosol	88.68	92.76
CDY50744	Canola	cytosol	88.05	92.11
AT3G04620.1	Thale cress	cytosol	84.28	81.71
CDX74179	Canola	cytosol	82.39	79.88
CDY40664	Canola	cytosol	76.73	75.78
CDY00026	Canola	cytosol, nucleus, plastid	57.23	73.98
CDY57017	Canola	cytosol, nucleus, plastid	55.97	72.36
CDX86203	Canola	cytosol	69.81	71.61
KRH34103	Soybean	plastid	54.09	65.15
KRG92697	Soybean	plastid	54.09	65.15
CDY17226	Canola	nucleus	49.06	60.0
CDY63142	Canola	nucleus	49.06	60.0
CDX90176	Canola	nucleus	47.17	57.69
CDY50785	Canola	cytosol, nucleus, plastid	47.17	57.69
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	46.54	56.92
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	46.54	56.92
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	46.54	56.92
CDY43326	Canola	cytosol, nucleus, plastid	46.54	56.92
CDX99800	Canola	cytosol, nucleus, plastid	45.91	56.15
KRH68751	Soybean	plastid	47.8	55.07
KRG96999	Soybean	nucleus	44.65	55.04
GSMUA_Achr4P13630_001	Banana	cytosol	44.65	52.99
Solyc01g097050.2.1	Tomato	unclear	54.72	52.73
GSMUA_Achr4P06650_001	Banana	cytosol	49.06	52.7
PGSC0003DMT400070712	Potato	plastid	52.83	51.85
CDX79500	Canola	cytosol	55.97	50.28
CDY28657	Canola	mitochondrion	60.38	48.24
CDY68615	Canola	nucleus, plastid	57.86	42.99
Os12t0489300-01	Rice	plasma membrane	45.28	42.6
TraesCS3A01G439300.1	Wheat	nucleus	47.17	39.68
TraesCS3B01G473200.1	Wheat	nucleus	47.17	39.68
HORVU3Hr1G095800.1	Barley	nucleus	46.54	39.15
TraesCS3D01G432100.1	Wheat	nucleus	46.54	39.15
EES17034	Sorghum	nucleus	43.4	36.32
Zm00001d023639_P002	Maize	cytosol	43.4	33.82
CDY53532	Canola	nucleus	47.8	32.2

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	GO:A0A078GU39	UniProt:A0A078GU39	InterPro:Alba-like_dom_sf	EnsemblPlants:CDY30010
ProteinID:CDY30010	ProteinID:CDY30010.1	ncoils:Coil	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00044541001	InterPro:IPR036882	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI0004EDF739	SEG:seg	:

Description

BnaC01g39980DBnaC01g39980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU39]

Coordinates

chrLK032247:-:437744..438851

Molecular Weight (calculated)

16974.6 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.038

Length

159 amino acids

Sequence
(BLAST)

001: MAMEVATPAF APITSPEINI VLAAAAPAAK KASVETHKKN RIQVSNTKKP LFFYVNLAKR YIQQHNEVEL SALGMAITTV VTISEILKNN GLATEKKVLT
101: STVGLRDETK GKMIEIVLGK SAKFDSLVPP VTNGKTPEEV AKAETEAAVE VQEAAATEA

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.