Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50744 | Canola | cytosol | 33.05 | 51.32 |
| CDY41887 | Canola | cytosol | 33.05 | 51.32 |
| CDY21118 | Canola | cytosol | 32.63 | 49.36 |
| AT3G04620.1 | Thale cress | cytosol | 33.47 | 48.17 |
| CDY30010 | Canola | cytosol | 32.2 | 47.8 |
| CDX74179 | Canola | cytosol | 32.63 | 46.95 |
| KRG92697 | Soybean | plastid | 25.85 | 46.21 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 23.73 | 45.53 |
| KRH34103 | Soybean | plastid | 25.42 | 45.45 |
| CDY40664 | Canola | cytosol | 30.93 | 45.34 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 23.31 | 44.72 |
| CDX86203 | Canola | cytosol | 29.24 | 44.52 |
| KRH68751 | Soybean | plastid | 24.15 | 41.3 |
| KRG96999 | Soybean | nucleus | 22.46 | 41.09 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 22.46 | 40.77 |
| CDX79500 | Canola | cytosol | 30.51 | 40.68 |
| CDY28657 | Canola | mitochondrion | 33.9 | 40.2 |
| CDX90176 | Canola | nucleus | 22.03 | 40.0 |
| CDY63142 | Canola | nucleus | 21.61 | 39.23 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 21.61 | 39.23 |
| CDY17226 | Canola | nucleus | 21.19 | 38.46 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 21.19 | 38.46 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 21.19 | 38.46 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 21.19 | 38.46 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 21.19 | 38.46 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 23.31 | 37.16 |
| CDY68615 | Canola | nucleus, plastid | 33.47 | 36.92 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 20.76 | 36.57 |
| PGSC0003DMT400070712 | Potato | plastid | 24.58 | 35.8 |
| Solyc01g097050.2.1 | Tomato | unclear | 25.0 | 35.76 |
| Os12t0489300-01 | Rice | plasma membrane | 24.15 | 33.73 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 26.69 | 33.33 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 26.69 | 33.33 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 26.27 | 32.8 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 25.42 | 31.75 |
| EES17034 | Sorghum | nucleus | 25.0 | 31.05 |
| Zm00001d023639_P002 | Maize | cytosol | 25.0 | 28.92 |
Protein Annotations
| EnsemblPlants:CDY53532 | EnsemblPlantsGene:GSBRNA2T00010881001 | Gene3D:3.30.110.20 | GO:A0A078IU84 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:IPR036882 | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF5 | ProteinID:CDY53532 |
| ProteinID:CDY53532.1 | SEG:seg | SUPFAM:SSF82704 | UniParc:UPI0004EB84ED | UniProt:A0A078IU84 | MapMan:15.3.7.2.1 |
Description
BnaCnng25360DBnaCnng25360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU84]
Coordinates
chrLK033211:-:18165..19545
Molecular Weight (calculated)
26768.0 Da
IEP (calculated)
4.885
GRAVY (calculated)
-0.417
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHHPRSTFN EIDVDEPVSV VDEDDPASHL LPIQWPQPQN EEIFLAMEEA EFEEKKRRES LRRKKLRVIE EEDGDGNSNT GSCTDHIPED KHHPLAGKDG
101: DSQEEHVQVS NMKKPLFFYV NLAKREICLV DLVLVPERSL AFICPPKCLF VFQIEQFEKV SESILCDMHC VRCRAITMVV TISEILKNTG LTTEKKVLTS
201: TVGMNDEAKG NMIEIVLGKS DKFDSLVPHV TNGKTP
101: DSQEEHVQVS NMKKPLFFYV NLAKREICLV DLVLVPERSL AFICPPKCLF VFQIEQFEKV SESILCDMHC VRCRAITMVV TISEILKNTG LTTEKKVLTS
201: TVGMNDEAKG NMIEIVLGKS DKFDSLVPHV TNGKTP
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.