Factsheet for PGSC0003DMT400070712

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34103	Soybean	plastid	54.94	67.42
Solyc01g097050.2.1	Tomato	unclear	68.52	67.27
KRG92697	Soybean	plastid	53.7	65.91
Bra036129.1-P	Field mustard	plastid	46.3	61.98
CDY57017	Canola	cytosol, nucleus, plastid	46.3	60.98
CDY00026	Canola	cytosol, nucleus, plastid	46.3	60.98
CDY41887	Canola	cytosol	56.17	59.87
Bra040393.1-P	Field mustard	cytosol	55.56	59.21
CDY50744	Canola	cytosol	55.56	59.21
PGSC0003DMT400052712	Potato	cytosol	46.3	58.59
PGSC0003DMT400073472	Potato	cytosol	45.68	58.27
KRH68751	Soybean	plastid	49.38	57.97
PGSC0003DMT400052773	Potato	cytosol	45.68	57.81
CDY40664	Canola	cytosol	57.41	57.76
GSMUA_Achr4P13630_001	Banana	cytosol	47.53	57.46
CDX86203	Canola	cytosol	54.94	57.42
Bra010003.1-P	Field mustard	cytosol	54.94	57.42
KRG96999	Soybean	nucleus	45.68	57.36
Bra001110.1-P	Field mustard	cytosol	57.41	56.71
CDX74179	Canola	cytosol	57.41	56.71
AT3G04620.1	Thale cress	cytosol	56.79	56.1
CDY21118	Canola	cytosol	52.47	54.49
GSMUA_Achr4P06650_001	Banana	cytosol	49.38	54.05
CDY30010	Canola	cytosol	51.85	52.83
Os12t0489300-01	Rice	plasma membrane	50.0	47.93
EES17034	Sorghum	nucleus	51.23	43.68
TraesCS3B01G473200.1	Wheat	nucleus	48.77	41.8
HORVU3Hr1G095800.1	Barley	nucleus	48.15	41.27
TraesCS3A01G439300.1	Wheat	nucleus	48.15	41.27
TraesCS3D01G432100.1	Wheat	nucleus	47.53	40.74
Zm00001d023639_P002	Maize	cytosol	50.62	40.2
CDX79500	Canola	cytosol	37.65	34.46
CDY28657	Canola	mitochondrion	41.98	34.17
CDY68615	Canola	nucleus, plastid	39.51	29.91
CDY53532	Canola	nucleus	35.8	24.58

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	InterPro:IPR036882	UniProt:M1CMK4	PFAM:PF01918	EnsemblPlantsGene:PGSC0003DMG400027494	PGSC:PGSC0003DMG400027494
EnsemblPlants:PGSC0003DMT400070712	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba
UniParc:UPI0002967CA3	SEG:seg	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027494]

Coordinates

chr1:-:74813032..74816286

Molecular Weight (calculated)

17511.0 Da

IEP (calculated)

10.550

GRAVY (calculated)

-0.575

Length

162 amino acids

Sequence
(BLAST)

001: MTPVAAPTPA TATPASTPAA PAPTNNNNNE AQKKSNRIQV SNTKKPLFFY VNLAKRYMQQ HTEVELSALG MAITTVVTVA EILKNGGFAT EKKVLTSTVG
101: MKDEAKGRMV QKARIEIVLT KSEKFDKLMT PNNTNSDRAV AQDGAATNKT TITSDTKEQN KK

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.