Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- golgi 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068050.2.1 | Tomato | nucleus | 96.85 | 96.85 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 74.02 | 74.02 |
| KRH23562 | Soybean | nucleus | 75.59 | 72.18 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 73.23 | 72.09 |
| EER88613 | Sorghum | cytosol, nucleus, plastid | 73.23 | 72.09 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 74.02 | 71.76 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 73.23 | 71.54 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 72.44 | 71.32 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 74.02 | 71.21 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 72.44 | 70.77 |
| AT2G34160.1 | Thale cress | cytosol | 71.65 | 70.0 |
| CDY63142 | Canola | nucleus | 71.65 | 70.0 |
| Bra005449.1-P | Field mustard | nucleus | 71.65 | 70.0 |
| CDY17226 | Canola | nucleus | 71.65 | 70.0 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 72.44 | 69.7 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 72.44 | 69.7 |
| Os06t0602600-01 | Rice | nucleus | 72.44 | 69.7 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 71.65 | 68.94 |
| PGSC0003DMT400052773 | Potato | cytosol | 69.29 | 68.75 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 70.08 | 68.46 |
| Bra010843.1-P | Field mustard | nucleus | 70.08 | 68.46 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 70.08 | 68.46 |
| CDX90176 | Canola | nucleus | 70.08 | 68.46 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.08 | 68.46 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 70.08 | 68.46 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.08 | 68.46 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 70.08 | 68.46 |
| PGSC0003DMT400052712 | Potato | cytosol | 68.5 | 67.97 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 70.08 | 67.94 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 69.29 | 67.69 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 69.29 | 67.69 |
| Os02t0202500-01 | Rice | nucleus | 36.22 | 66.67 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 66.14 | 65.62 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 70.08 | 64.03 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 70.08 | 64.03 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 70.87 | 63.83 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 66.93 | 63.43 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 69.29 | 63.31 |
| KRH44436 | Soybean | nucleus | 71.65 | 63.19 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 68.5 | 62.59 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 68.5 | 59.18 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 60.63 | 57.89 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 60.63 | 57.46 |
| EES19123 | Sorghum | nucleus | 60.63 | 57.46 |
| KRH47470 | Soybean | nucleus | 62.2 | 57.25 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 60.63 | 57.04 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 64.57 | 55.78 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 72.44 | 54.76 |
| Os01t0173100-01 | Rice | nucleus | 63.78 | 53.29 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 63.78 | 52.94 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 63.78 | 52.26 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 62.99 | 51.61 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 38.58 | 49.0 |
| PGSC0003DMT400070712 | Potato | plastid | 58.27 | 45.68 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 55.91 | 43.03 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 37.8 | 42.11 |
| Zm00001d009798_P001 | Maize | cytosol | 56.69 | 39.13 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 56.69 | 36.18 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 46.46 | 24.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073472 | EnsemblPlantsGene:PGSC0003DMG400028540 | EntrezGene:102594258 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF11 | PFAM:PF01918 | PGSC:PGSC0003DMG400028540 | PIRSF:PIRSF030333 | RefSeq:XP_006356204.1 | RefSeq:XP_015168214.1 |
| SUPFAM:SSF82704 | UniParc:UPI0002963BA8 | UniProt:M1CS31 | MapMan:15.3.7.2.1 | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028540]
Coordinates
chr6:+:49752965..49755906
Molecular Weight (calculated)
14251.3 Da
IEP (calculated)
8.904
GRAVY (calculated)
-0.326
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELAEGVSN LNLVDSQRKN RIQVSNTKKP LFFYVNLSKR YMQQYNEVEL SALGMAISTV VSIAEILKNN GLATEKKIMT STVDVKEDMR GRPVQKAKIE
101: IVLGKTVNFD ELMLAGLKDG NNIQEQS
101: IVLGKTVNFD ELMLAGLKDG NNIQEQS
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.