Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 96.13 | 96.13 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 90.97 | 92.16 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 76.77 | 80.95 |
| Os01t0173100-01 | Rice | nucleus | 76.77 | 78.29 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 61.94 | 74.42 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 61.94 | 72.73 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 59.35 | 71.32 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 59.35 | 70.77 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.35 | 70.77 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.35 | 70.77 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.35 | 70.77 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 59.35 | 70.77 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 59.35 | 70.23 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 59.35 | 70.23 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 57.42 | 70.08 |
| Bra010843.1-P | Field mustard | nucleus | 58.71 | 70.0 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 58.71 | 70.0 |
| CDX90176 | Canola | nucleus | 58.71 | 70.0 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 58.71 | 70.0 |
| KRH23562 | Soybean | nucleus | 60.0 | 69.92 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 59.35 | 69.7 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 58.06 | 69.23 |
| Bra005449.1-P | Field mustard | nucleus | 58.06 | 69.23 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 58.06 | 69.23 |
| CDY63142 | Canola | nucleus | 58.06 | 69.23 |
| CDY17226 | Canola | nucleus | 58.06 | 69.23 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 57.42 | 68.99 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 57.42 | 68.46 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 59.35 | 68.15 |
| AT2G34160.1 | Thale cress | cytosol | 56.77 | 67.69 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 58.06 | 67.16 |
| KRH44436 | Soybean | nucleus | 61.29 | 65.97 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 54.19 | 65.62 |
| Solyc06g068050.2.1 | Tomato | nucleus | 52.26 | 63.78 |
| PGSC0003DMT400073472 | Potato | cytosol | 51.61 | 62.99 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 56.13 | 62.59 |
| KRH47470 | Soybean | nucleus | 53.55 | 60.14 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 56.13 | 59.18 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 66.45 | 51.76 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 49.68 | 40.74 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 29.03 | 39.47 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 53.55 | 34.44 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G129200.1 | EnsemblPlantsGene:TraesCS3A01G129200 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr3A:+:106657577..106659481
Molecular Weight (calculated)
16252.1 Da
IEP (calculated)
4.666
GRAVY (calculated)
-0.319
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEGITEGV RGLKVEDGEG AAGAAADAPA AAAAAGEGQR RGASGSSNRI QVSNTKKPLF FYVNLAKRYM QQHGDVELSA LGMAIATVVT VAEILKNNGL
101: AVEKKIRTST VEINDESRGR PFQKAKIEIE LGKSEKFDEL MASAAADAEE GEEEA
101: AVEKKIRTST VEINDESRGR PFQKAKIEIE LGKSEKFDEL MASAAADAEE GEEEA
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.