Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00222 | Sorghum | cytosol, nucleus, plastid | 43.57 | 71.43 |
| Os01t0173100-01 | Rice | nucleus | 36.93 | 58.55 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 36.1 | 56.86 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 30.29 | 55.73 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 35.68 | 55.48 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 30.29 | 55.3 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 29.46 | 55.04 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 29.05 | 54.26 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 29.05 | 53.85 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 44.4 | 53.77 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 34.44 | 53.55 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 28.63 | 53.49 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 29.05 | 53.44 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 28.63 | 53.08 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 28.22 | 52.31 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 27.39 | 51.97 |
| CDY63142 | Canola | nucleus | 27.8 | 51.54 |
| CDY17226 | Canola | nucleus | 27.8 | 51.54 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 27.8 | 51.54 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 27.8 | 51.54 |
| Bra005449.1-P | Field mustard | nucleus | 27.8 | 51.54 |
| KRH23562 | Soybean | nucleus | 28.22 | 51.13 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 29.46 | 51.08 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 27.39 | 50.77 |
| AT2G34160.1 | Thale cress | cytosol | 27.39 | 50.77 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 27.39 | 50.77 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 27.39 | 50.77 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 27.39 | 50.77 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 26.97 | 50.0 |
| CDX90176 | Canola | nucleus | 26.97 | 50.0 |
| Bra010843.1-P | Field mustard | nucleus | 26.97 | 50.0 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 26.97 | 48.51 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 25.73 | 48.44 |
| Solyc06g068050.2.1 | Tomato | nucleus | 24.9 | 47.24 |
| KRH44436 | Soybean | nucleus | 27.8 | 46.53 |
| PGSC0003DMT400073472 | Potato | cytosol | 24.48 | 46.46 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 27.39 | 44.9 |
| KRH47470 | Soybean | nucleus | 22.41 | 39.13 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 15.35 | 37.0 |
| Zm00001d009798_P001 | Maize | cytosol | 21.99 | 28.8 |
| Zm00001d023639_P002 | Maize | cytosol | 21.58 | 25.49 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 11.62 | 24.56 |
Protein Annotations
| EnsemblPlants:Zm00001d008731_P001 | EnsemblPlants:Zm00001d008731_T001 | EnsemblPlantsGene:Zm00001d008731 | EntrezGene:100275297 | Gene3D:3.30.110.20 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Alba-like_dom_sf |
| InterPro:IPR036882 | ncoils:Coil | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 | ProteinID:AQK90533.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000843E19F | UniProt:A0A1D6FF13 | MapMan:15.3.7.2.1 | : | : |
Description
Alba DNA/RNA-binding protein
Coordinates
chr8:-:17972592..17976811
Molecular Weight (calculated)
26811.0 Da
IEP (calculated)
8.750
GRAVY (calculated)
0.110
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEEEITEGL KNLTVTGDAA ASGGEGQRRG GGISSNRIQV SNTKKPLFFY VNLAKVRTYG CPFPLPAASF RDVDVPSPRF RFLTALVGWL LACFGSCRGI
101: CSSTAMWSCP LLEWVRPCNN PLSFFLIIYL LFISGGVNLG MAACHRWLMK GLRLRLRLLK KPYQTGLCLI YIMARMIHIF AALILPIEIR TSTVDINDES
201: RGRPFQKAKI EIILGKSDRF NELMAAAAEE RGEVEEGEEQ A
101: CSSTAMWSCP LLEWVRPCNN PLSFFLIIYL LFISGGVNLG MAACHRWLMK GLRLRLRLLK KPYQTGLCLI YIMARMIHIF AALILPIEIR TSTVDINDES
201: RGRPFQKAKI EIILGKSDRF NELMAAAAEE RGEVEEGEEQ A
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.