Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50785 | Canola | cytosol, nucleus, plastid | 95.38 | 95.38 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 94.62 | 94.62 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 93.85 | 93.85 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 93.85 | 93.85 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 93.85 | 93.85 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 93.85 | 93.85 |
| AT2G34160.1 | Thale cress | cytosol | 93.08 | 93.08 |
| Bra010843.1-P | Field mustard | nucleus | 93.08 | 93.08 |
| CDX90176 | Canola | nucleus | 93.08 | 93.08 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 93.08 | 93.08 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 91.54 | 91.54 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 80.77 | 80.77 |
| EER88613 | Sorghum | cytosol, nucleus, plastid | 80.0 | 80.62 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 78.46 | 79.07 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 77.69 | 78.29 |
| KRH23562 | Soybean | nucleus | 80.0 | 78.2 |
| Os06t0602600-01 | Rice | nucleus | 79.23 | 78.03 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 78.46 | 77.86 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 74.62 | 76.38 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 75.38 | 75.97 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 76.92 | 75.76 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 76.15 | 75.57 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 76.15 | 75.0 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 75.38 | 74.24 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 75.38 | 74.24 |
| Os02t0202500-01 | Rice | nucleus | 39.23 | 73.91 |
| PGSC0003DMT400073472 | Potato | cytosol | 70.77 | 72.44 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 76.92 | 71.94 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 76.92 | 71.94 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 76.92 | 71.94 |
| PGSC0003DMT400052773 | Potato | cytosol | 70.77 | 71.88 |
| Solyc06g068050.2.1 | Tomato | nucleus | 70.0 | 71.65 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 77.69 | 71.63 |
| PGSC0003DMT400052712 | Potato | cytosol | 70.0 | 71.09 |
| Solyc06g066100.2.1 | Tomato | nucleus | 70.0 | 71.09 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 75.38 | 70.5 |
| Solyc06g065980.2.1 | Tomato | nucleus | 69.23 | 70.31 |
| KRH44436 | Soybean | nucleus | 77.69 | 70.14 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 68.46 | 69.53 |
| Os01t0173100-01 | Rice | nucleus | 78.46 | 67.11 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 75.38 | 66.67 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 75.38 | 66.67 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 67.69 | 65.67 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 65.38 | 63.91 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 66.15 | 63.7 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 65.38 | 63.43 |
| KRH47470 | Soybean | nucleus | 66.92 | 63.04 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 71.54 | 60.78 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 70.77 | 59.35 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 70.77 | 59.35 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 76.15 | 58.93 |
| EES19123 | Sorghum | nucleus | 59.23 | 57.46 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 38.46 | 50.0 |
| AT3G04620.1 | Thale cress | cytosol | 63.08 | 50.0 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 61.54 | 48.48 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 37.69 | 42.98 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 65.38 | 42.71 |
| Zm00001d009798_P001 | Maize | cytosol | 54.62 | 38.59 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 53.08 | 28.63 |
Protein Annotations
| MapMan:15.3.7.2.1 | Gene3D:3.30.110.20 | EntrezGene:839799 | UniProt:A0A178W7M4 | ProteinID:AAF88114.1 | ProteinID:AEE31065.1 |
| ArrayExpress:AT1G29250 | EnsemblPlantsGene:AT1G29250 | RefSeq:AT1G29250 | TAIR:AT1G29250 | RefSeq:AT1G29250-TAIR-G | EnsemblPlants:AT1G29250.1 |
| TAIR:AT1G29250.1 | EMBL:AY052259 | EMBL:AY060517 | EMBL:AY085788 | InterPro:Alba-like_dom_sf | Unigene:At.15801 |
| ncoils:Coil | InterPro:DNA/RNA-bd_Alba-like | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR036882 | RefSeq:NP_564325.1 |
| ProteinID:OAP13373.1 | PFAM:PF01918 | PIRSF:PIRSF030333 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF11 | UniProt:Q9LP53 | SUPFAM:SSF82704 | InterPro:UCP030333_Alba | UniParc:UPI00000A0C38 | SEG:seg |
Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
Coordinates
chr1:-:10223266..10224799
Molecular Weight (calculated)
14574.5 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.453
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.