Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 99.25 | 97.78 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 98.5 | 97.76 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 66.92 | 67.94 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 65.41 | 67.44 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 65.41 | 66.92 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 66.17 | 66.67 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 63.16 | 66.14 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 63.91 | 65.89 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 63.91 | 65.89 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 64.66 | 65.65 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 63.91 | 65.38 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 63.91 | 65.38 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 80.45 | 64.85 |
| KRH23562 | Soybean | nucleus | 64.66 | 64.66 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 63.16 | 64.62 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.16 | 64.62 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.16 | 64.62 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 63.16 | 64.62 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.16 | 64.62 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.16 | 64.62 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 63.16 | 64.62 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 66.17 | 63.31 |
| CDX90176 | Canola | nucleus | 61.65 | 63.08 |
| Bra010843.1-P | Field mustard | nucleus | 61.65 | 63.08 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 62.41 | 62.88 |
| CDY63142 | Canola | nucleus | 60.9 | 62.31 |
| CDY17226 | Canola | nucleus | 60.9 | 62.31 |
| Bra005449.1-P | Field mustard | nucleus | 60.9 | 62.31 |
| AT2G34160.1 | Thale cress | cytosol | 60.9 | 62.31 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 62.41 | 61.94 |
| EES19123 | Sorghum | nucleus | 62.41 | 61.94 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 69.92 | 60.78 |
| Solyc06g068050.2.1 | Tomato | nucleus | 57.89 | 60.63 |
| PGSC0003DMT400073472 | Potato | cytosol | 57.89 | 60.63 |
| KRH44436 | Soybean | nucleus | 64.66 | 59.72 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 57.14 | 59.38 |
| KRH47470 | Soybean | nucleus | 55.64 | 53.62 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 58.65 | 53.06 |
| Zm00001d009798_P001 | Maize | cytosol | 56.39 | 40.76 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 51.13 | 35.98 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 30.83 | 35.96 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G135500.1 | EnsemblPlantsGene:TraesCS1B01G135500 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr1B:-:172381974..172388068
Molecular Weight (calculated)
14510.2 Da
IEP (calculated)
5.317
GRAVY (calculated)
-0.441
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDAAEAQR ARAANGSGGG GSSNRIQVSN TKKPLFFYVN LAKRYMQQHG EVELSALGMA IATVVTVAEI LKNNGFAFET RIRTSTVEIK DEMRGRPIQK
101: AKIEIVLRKS DKFDELMATA AAEEAAEDEE EQT
101: AKIEIVLRKS DKFDELMATA AAEEAAEDEE EQT
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.