Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88613 | Sorghum | cytosol, nucleus, plastid | 63.43 | 65.89 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 63.43 | 65.89 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 62.69 | 64.62 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 62.69 | 64.12 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 60.45 | 63.78 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 61.19 | 63.57 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 61.19 | 63.57 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 61.19 | 62.6 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 61.94 | 62.41 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 62.69 | 62.22 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 61.94 | 61.94 |
| KRH23562 | Soybean | nucleus | 61.19 | 61.65 |
| Solyc06g068050.2.1 | Tomato | nucleus | 58.21 | 61.42 |
| PGSC0003DMT400073472 | Potato | cytosol | 57.46 | 60.63 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 58.21 | 60.0 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 58.96 | 59.85 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 56.72 | 59.38 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 57.46 | 59.23 |
| CDY63142 | Canola | nucleus | 57.46 | 59.23 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 57.46 | 59.23 |
| CDY17226 | Canola | nucleus | 57.46 | 59.23 |
| Bra005449.1-P | Field mustard | nucleus | 57.46 | 59.23 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 57.46 | 59.23 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 57.46 | 59.23 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 57.46 | 59.23 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 57.46 | 59.23 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 64.18 | 58.5 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 56.72 | 58.46 |
| Bra010843.1-P | Field mustard | nucleus | 56.72 | 58.46 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 56.72 | 58.46 |
| CDX90176 | Canola | nucleus | 56.72 | 58.46 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 58.21 | 58.21 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 61.19 | 58.16 |
| KRH44436 | Soybean | nucleus | 61.19 | 56.94 |
| AT2G34160.1 | Thale cress | cytosol | 55.22 | 56.92 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 57.46 | 52.38 |
| KRH47470 | Soybean | nucleus | 52.99 | 51.45 |
| Zm00001d009798_P001 | Maize | cytosol | 68.66 | 50.0 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 58.96 | 47.88 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 34.33 | 40.35 |
| EES17034 | Sorghum | nucleus | 48.51 | 34.21 |
Protein Annotations
| MapMan:15.3.7.2.1 | Gene3D:3.30.110.20 | EntrezGene:8080952 | InterPro:Alba-like_dom_sf | UniProt:C5Z151 | InterPro:DNA/RNA-bd_Alba-like |
| EnsemblPlants:EES19123 | ProteinID:EES19123 | ProteinID:EES19123.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036882 | PFAM:PF01918 | PIRSF:PIRSF030333 | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 | EnsemblPlantsGene:SORBI_3009G063200 |
| SUPFAM:SSF82704 | unigene:Sbi.18570 | InterPro:UCP030333_Alba | UniParc:UPI0001A88DDE | RefSeq:XP_002440693.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:-:6694750..6696439
Molecular Weight (calculated)
14306.1 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.310
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGDMAAQA GGDAQQQQQQ AVGGNRIQVS SSKKPLFFYV NLAKKYMQQH GDVELSALGL AISTVVTIAE ILKNNGLAVE KKIRTSTVEI IDETKARPIQ
101: KAKIEIVLGK TDKFEELMAA NVGDANAGDG EEQT
101: KAKIEIVLGK TDKFEELMAA NVGDANAGDG EEQT
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.