CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09747	Soybean	cytosol, nucleus, plasma membrane	90.23	91.6
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	84.96	87.6
GSMUA_Achr6P00670_001	Banana	nucleus	81.95	85.83
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	80.45	82.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	78.95	81.4
EER88613	Sorghum	cytosol, nucleus, plastid	78.95	81.4
GSMUA_Achr7P08310_001	Banana	cytosol	80.45	81.06
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	79.7	80.92
KRH44436	Soybean	nucleus	87.22	80.56
AT1G29250.1	Thale cress	cytosol, nucleus, plastid	78.2	80.0
TraesCS7D01G348900.1	Wheat	cytosol, nucleus, plastid	78.95	79.55
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	77.44	79.23
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	77.44	79.23
Os06t0602600-01	Rice	nucleus	78.2	78.79
TraesCS7A01G374500.1	Wheat	nucleus	78.2	78.79
TraesCS7B01G252900.1	Wheat	cytosol	78.2	78.79
CDY63142	Canola	nucleus	76.69	78.46
Bra005449.1-P	Field mustard	nucleus	76.69	78.46
Bra010843.1-P	Field mustard	nucleus	76.69	78.46
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	76.69	78.46
CDX90176	Canola	nucleus	76.69	78.46
CDY17226	Canola	nucleus	76.69	78.46
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	76.69	78.46
CDY43326	Canola	cytosol, nucleus, plastid	76.69	78.46
CDY50785	Canola	cytosol, nucleus, plastid	76.69	78.46
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	75.94	77.69
AT2G34160.1	Thale cress	cytosol	75.94	77.69
CDX99800	Canola	cytosol, nucleus, plastid	74.44	76.15
PGSC0003DMT400073472	Potato	cytosol	72.18	75.59
Os02t0202500-01	Rice	nucleus	39.1	75.36
Solyc06g068050.2.1	Tomato	nucleus	71.43	74.8
TraesCS6D01G168100.1	Wheat	cytosol, nucleus, plastid	77.44	74.1
TraesCS6B01G209900.1	Wheat	cytosol, nucleus, plastid	77.44	74.1
Zm00001d053625_P001	Maize	extracellular, plasma membrane	77.44	74.1
KRH47470	Soybean	nucleus	76.69	73.91
TraesCS6A01G175200.1	Wheat	cytosol, nucleus, plastid	76.69	73.38
EES06481	Sorghum	cytosol, nucleus, plastid	77.44	73.05
GSMUA_Achr7P09990_001	Banana	cytosol	69.17	71.88
GSMUA_Achr6P05270_001	Banana	cytosol	72.18	71.64
EES00222	Sorghum	cytosol, nucleus, plastid	72.93	65.99
TraesCS1D01G117000.1	Wheat	cytosol	65.41	64.93
TraesCS1B01G135500.1	Wheat	cytosol, nucleus, plastid	64.66	64.66
TraesCS1A01G115600.1	Wheat	cytosol, nucleus, plastid	65.41	64.44
KRH34103	Soybean	plastid	63.16	63.64
Os01t0173100-01	Rice	nucleus	72.18	63.16
KRG92697	Soybean	plastid	62.41	62.88
HORVU7Hr1G084100.1	Barley	mitochondrion	78.95	62.5
KRG96999	Soybean	nucleus	60.15	62.02
TraesCS3D01G130100.1	Wheat	cytosol, nucleus, plastid	72.18	61.94
TraesCS3B01G148300.1	Wheat	cytosol, nucleus, plastid	70.68	61.44
EES19123	Sorghum	nucleus	61.65	61.19
TraesCS3A01G129200.1	Wheat	cytosol, nucleus, plastid	69.92	60.0
KRH68751	Soybean	plastid	59.4	57.25
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	39.1	52.0
HORVU1Hr1G025500.1	Barley	cytosol, nucleus, plastid	61.65	49.7
KRH77811	Soybean	cytosol	47.37	47.73
GSMUA_Achr7P10060_001	Banana	extracellular	40.6	47.37
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	63.16	42.21
Zm00001d009798_P001	Maize	cytosol	57.89	41.85
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	51.13	28.22

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EMBL:ACUP02008474	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	EnsemblPlantsGene:GLYMA_13G364200
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:I1M5S6	InterPro:IPR036882	EnsemblPlants:KRH23562	ProteinID:KRH23562	ProteinID:KRH23562.1	PFAM:PF01918
PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF11	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI0001BA88F8

Description

hypothetical protein

Coordinates

chr13:+:45069376..45071935

Molecular Weight (calculated)

14701.5 Da

IEP (calculated)

4.816

GRAVY (calculated)

-0.402

Length

133 amino acids

Sequence
(BLAST)

001: MEGITEGVNN ININISDSYK KNRIQVSNTK KPLFFYVNLA KRYMQQHDEV ELSALGMAIA TVVTVAEILK NNGLAVEKKI TTSTVDIKDD SRGRPVQKAK
101: IEIVLGKTEN FDELMAAAAA EDGENRDVEE QSA

Best Arabidopsis Sequence Match ( AT1G29250.1 )
(BLAST)

001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.