Factsheet for Os06t0602600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 23303719
nucleus: 24133045
plasma membrane: 27800704
plastid: 27992503

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G374500.1	Wheat	nucleus	90.91	90.91
TraesCS7D01G348900.1	Wheat	cytosol, nucleus, plastid	90.15	90.15
Os02t0202500-01	Rice	nucleus	46.97	89.86
TraesCS7B01G252900.1	Wheat	cytosol	89.39	89.39
EER88613	Sorghum	cytosol, nucleus, plastid	87.12	89.15
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	83.33	85.27
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	82.58	84.5
VIT_11s0016g05100.t01	Wine grape	nucleus	82.58	83.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	81.82	83.72
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	81.82	82.44
GSMUA_Achr6P00670_001	Banana	nucleus	78.79	81.89
GSMUA_Achr7P08310_001	Banana	cytosol	81.82	81.82
AT1G29250.1	Thale cress	cytosol, nucleus, plastid	78.03	79.23
KRH23562	Soybean	nucleus	78.79	78.2
KRH09747	Soybean	cytosol, nucleus, plasma membrane	77.27	77.86
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	76.52	77.69
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	76.52	77.69
CDY50785	Canola	cytosol, nucleus, plastid	76.52	77.69
CDY63142	Canola	nucleus	75.76	76.92
Bra005449.1-P	Field mustard	nucleus	75.76	76.92
CDY17226	Canola	nucleus	75.76	76.92
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	75.76	76.92
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	75.76	76.92
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	75.76	76.92
AT2G34160.1	Thale cress	cytosol	75.0	76.15
CDX99800	Canola	cytosol, nucleus, plastid	75.0	76.15
CDX90176	Canola	nucleus	74.24	75.38
Bra010843.1-P	Field mustard	nucleus	74.24	75.38
CDY43326	Canola	cytosol, nucleus, plastid	72.73	73.85
Solyc06g068050.2.1	Tomato	nucleus	69.7	72.44
PGSC0003DMT400073472	Potato	cytosol	69.7	72.44
KRH44436	Soybean	nucleus	78.79	72.22
GSMUA_Achr6P05270_001	Banana	cytosol	72.73	71.64
GSMUA_Achr7P09990_001	Banana	cytosol	68.94	71.09
HORVU7Hr1G084100.1	Barley	mitochondrion	89.39	70.24
VIT_04s0023g02330.t01	Wine grape	cytosol	76.52	68.71
KRH47470	Soybean	nucleus	68.94	65.94
Os01t0173100-01	Rice	nucleus	75.0	65.13
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	39.39	52.0
GSMUA_Achr7P10060_001	Banana	extracellular	39.39	45.61
Os12t0489300-01	Rice	plasma membrane	58.33	45.56

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EntrezGene:4341459	EMBL:AK121619	InterPro:Alba-like_dom_sf	ProteinID:BAD35458.1
ProteinID:BAF19922.1	ProteinID:BAS98502.1	ncoils:Coil	InterPro:DNA/RNA-bd_Alba-like	ProteinID:EAZ37563.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR036882	EnsemblPlantsGene:Os06g0602600	EnsemblPlants:Os06t0602600-01	PFAM:PF01918
PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF12	UniProt:Q69XJ9	SUPFAM:SSF82704	InterPro:UCP030333_Alba
UniParc:UPI00004037CE	RefSeq:XP_015643177.1	SEG:seg	:	:	:

Description

Alba, DNA/RNA-binding protein family protein. (Os06t0602600-01)

Coordinates

chr6:+:23821410..23823279

Molecular Weight (calculated)

14607.6 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.376

Length

132 amino acids

Sequence
(BLAST)

001: MEEVTEAVSN LSITEPHKKN RIQVSNTKKP LFFYVNLAKR YMQQHNEVEL SALGMAIATV VTVAEILKNN GLAVEKKIMT STVDVKDDSR SRPMQKAKIE
101: ILLGKTEKFD ELMAAAAEER EAAAAAEGEE QG

Best Arabidopsis Sequence Match ( AT2G34160.1 )
(BLAST)

001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN

Arabidopsis Description

Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.