Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88613 | Sorghum | cytosol, nucleus, plastid | 57.0 | 44.19 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 53.0 | 40.15 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 53.0 | 40.15 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 53.0 | 40.15 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 52.0 | 39.69 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 52.0 | 39.69 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 51.0 | 39.53 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 52.0 | 39.39 |
| Os06t0602600-01 | Rice | nucleus | 52.0 | 39.39 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 50.0 | 39.37 |
| KRH23562 | Soybean | nucleus | 52.0 | 39.1 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 50.0 | 38.76 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 50.0 | 38.76 |
| PGSC0003DMT400073472 | Potato | cytosol | 49.0 | 38.58 |
| Solyc06g068050.2.1 | Tomato | nucleus | 49.0 | 38.58 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 50.0 | 38.46 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 50.0 | 38.46 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 50.0 | 38.46 |
| AT2G34160.1 | Thale cress | cytosol | 49.0 | 37.69 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 49.0 | 37.69 |
| Bra005449.1-P | Field mustard | nucleus | 49.0 | 37.69 |
| Bra010843.1-P | Field mustard | nucleus | 49.0 | 37.69 |
| CDY17226 | Canola | nucleus | 49.0 | 37.69 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 49.0 | 37.69 |
| CDX90176 | Canola | nucleus | 49.0 | 37.69 |
| CDY63142 | Canola | nucleus | 49.0 | 37.69 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 48.0 | 36.92 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 47.0 | 36.15 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 47.0 | 36.15 |
| KRH44436 | Soybean | nucleus | 52.0 | 36.11 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 50.0 | 35.97 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.0 | 35.38 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.0 | 35.38 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 43.0 | 33.59 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 48.0 | 32.65 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 43.0 | 32.09 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 53.0 | 31.55 |
| KRH47470 | Soybean | nucleus | 38.0 | 27.54 |
| Zm00001d009798_P001 | Maize | cytosol | 35.0 | 19.02 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 37.0 | 18.59 |
| Zm00001d023639_P002 | Maize | cytosol | 37.0 | 18.14 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 37.0 | 15.35 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 10.0 | 8.77 |
Protein Annotations
| EnsemblPlants:Zm00001d046401_P001 | EnsemblPlants:Zm00001d046401_T001 | EnsemblPlantsGene:Zm00001d046401 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Alba-like_dom_sf | InterPro:IPR036882 |
| InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF12 | PIRSF:PIRSF030333 | ProteinID:AQL04224.1 | SUPFAM:SSF82704 |
| TMHMM:TMhelix | UniParc:UPI0008439374 | UniProt:A0A1D6P2I9 | MapMan:15.3.7.2.1 | : | : |
Description
Alba DNA/RNA-binding protein
Coordinates
chr9:-:87447647..87449349
Molecular Weight (calculated)
11510.4 Da
IEP (calculated)
8.940
GRAVY (calculated)
0.166
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MEELTEGVNN LAITEPQMKN KIQVSNTKKP LFFYVNLAKR YMQQHEEVEL STLGMSKTLL LFMILLPFYT LFIISAIATM VTVAEILKNN RLVVEKSKDL
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.